Current i am on Fedora Silverblue 39, the problem was also present on 38, its hard to describe but certain aspects or components on Gnome are not displaying correctly. i have taken screenshots which provide a better understanding of the problem that i am having. Greatly appreciate any help to fixing this.
That is what happens to libadwaita apps when you set GTK_THEME.
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Sorry for such late reply, but that fixed the issue. Thanks