Thanks for the response, logs are below.
Errors
program.log
16:33:07,700 INF program: Running... ostree admin --sysroot=/mnt/sysimage deploy --os=fedora-workstation fedora-workstation:fedora/29/x86_64/silverblue
16:33:13,320 INF program: Relabeling /var (no stamp file 'var/.ostree-selabeled' found)
16:33:13,321 INF program: **
16:33:13,321 INF program: OSTree:ERROR:src/libostree/ostree-bootloader-grub2.c:354:_ostree_bootloader_grub2_write_config: assertion failed (deployments->len > 0): (0 > 0)
16:33:13,321 DBG program: Return code: -6
storage.log
16:30:57,870 DBG blivet: get_format('efivarfs') returning EFIVarFS instance with object id 604
16:30:57,870 DBG blivet: get_format('None') returning DeviceFormat instance with object id 606
16:30:57,870 DBG blivet: NoDevice._set_format: efivarfs ; type: efivarfs ; current: None ;
16:30:57,871 DBG blivet: NoDevice.update_sysfs_path: efivarfs ; status: False ;
16:30:57,871 ERR blivet: failed to update sysfs path for efivarfs: [Errno 2] No such file or directory: 'efivarfs'
16:30:57,872 DBG blivet: LVMLogicalVolumeDevice.setup: fedora00-root ; orig: False ; status: True ; controllable: True ;
16:30:57,897 DBG blivet: Ext4FS.setup: device: /dev/mapper/fedora00-root ; type: ext4 ; status: False ;
16:30:57,930 DBG blivet: PartitionDevice.setup: sda1 ; orig: False ; status: True ; controllable: True ;
16:30:58,011 DBG blivet: EFIFS.setup: device: /dev/sda1 ; type: efi ; status: False ;
16:30:58,041 INF blivet: failed to set SELinux context for /mnt/sysimage/boot/efi: [Errno 95] Operation not supported
16:30:58,041 WRN blivet: Failed to reset SElinux context for newly mounted filesystem root directory to default.
16:30:58,041 WRN blivet: Failed to set SELinux context for newly mounted filesystem lost+found directory at /boot/efi/lost+found to system_u:object_r:lost_found_t:s0
16:30:58,042 DBG blivet: DirectoryDevice.setup: /dev ; orig: False ; status: True ; controllable: True ;
16:30:58,164 DBG blivet: BindFS.setup: device: /dev ; type: bind ; status: False ;
16:30:58,192 WRN blivet: Failed to set SELinux context for newly mounted filesystem lost+found directory at /dev/lost+found to system_u:object_r:lost_found_t:s0
16:30:58,193 DBG blivet: NoDevice.setup: devpts ; orig: False ; status: False ; controllable: True ;
16:30:58,294 DBG blivet: DevPtsFS.setup: device: devpts ; type: devpts ; status: False ;
16:30:58,319 WRN blivet: Failed to set SELinux context for newly mounted filesystem lost+found directory at /dev/pts/lost+found to system_u:object_r:lost_found_t:s0
16:30:58,320 DBG blivet: NoDevice.setup: tmpfs ; orig: False ; status: False ; controllable: True ;
16:30:58,399 DBG blivet: TmpFS.setup: device: tmpfs ; type: tmpfs ; status: True ;
16:30:58,406 WRN blivet: Failed to set SELinux context for newly mounted filesystem lost+found directory at /dev/shm/lost+found to system_u:object_r:lost_found_t:s0
16:30:58,407 DBG blivet: NoDevice.setup: proc ; orig: False ; status: False ; controllable: True ;
16:30:58,512 DBG blivet: ProcFS.setup: device: proc ; type: proc ; status: False ;
16:30:58,542 INF blivet: failed to set SELinux context for /mnt/sysimage/proc: [Errno 95] Operation not supported
16:30:58,543 WRN blivet: Failed to reset SElinux context for newly mounted filesystem root directory to default.
16:30:58,543 WRN blivet: Failed to set SELinux context for newly mounted filesystem lost+found directory at /proc/lost+found to system_u:object_r:lost_found_t:s0
16:30:58,578 DBG blivet: DirectoryDevice.setup: /run ; orig: False ; status: True ; controllable: True ;
16:30:58,695 DBG blivet: BindFS.setup: device: /run ; type: bind ; status: False ;
16:30:58,723 WRN blivet: Failed to set SELinux context for newly mounted filesystem lost+found directory at /run/lost+found to system_u:object_r:lost_found_t:s0
16:30:58,724 DBG blivet: NoDevice.setup: sysfs ; orig: False ; status: False ; controllable: True ;
16:30:58,828 DBG blivet: SysFS.setup: device: sysfs ; type: sysfs ; status: False ;
16:30:58,854 WRN blivet: Failed to set SELinux context for newly mounted filesystem lost+found directory at /sys/lost+found to system_u:object_r:lost_found_t:s0
16:30:58,855 DBG blivet: NoDevice.setup: efivarfs ; orig: False ; status: False ; controllable: True ;
16:30:58,956 DBG blivet: EFIVarFS.setup: device: efivarfs ; type: efivarfs ; status: False ;
16:30:58,981 INF blivet: failed to set SELinux context for /mnt/sysimage/sys/firmware/efi/efivars: [Errno 95] Operation not supported
16:30:58,981 WRN blivet: Failed to reset SElinux context for newly mounted filesystem root directory to default.
16:30:58,981 WRN blivet: Failed to set SELinux context for newly mounted filesystem lost+found directory at /sys/firmware/efi/efivars/lost+found to system_u:object_r:lost_found_t:s0
16:30:58,982 DBG blivet: NoDevice.setup: selinuxfs ; orig: False ; status: False ; controllable: True ;
16:30:59,080 DBG blivet: SELinuxFS.setup: device: selinuxfs ; type: selinuxfs ; status: False ;
16:30:59,109 INF blivet: failed to set SELinux context for /mnt/sysimage/sys/fs/selinux: [Errno 95] Operation not supported
16:30:59,109 WRN blivet: Failed to reset SElinux context for newly mounted filesystem root directory to default.
16:30:59,109 WRN blivet: Failed to set SELinux context for newly mounted filesystem lost+found directory at /sys/fs/selinux/lost+found to system_u:object_r:lost_found_t:s0
anaconda.log
16:33:07,381 INF payload.rpmostreepayload: ostree pull: 6790 metadata, 92403 content objects imported
16:33:07,700 INF payload.rpmostreepayload: ostree admin deploy starting
Full Logs
Google drive