Problem upgrading from F38 to F39. System is in a half-way state

espadav8 · November 15, 2023, 1:57am

I performed an upgrade from the CLI. Packages downloaded, no issues found. Rebooted and packages seemed to install, however, upon booting up again I have a completely broken login screen and cannot access any of sessions. I was running KDE and that was missing from the list with only 4 GNOME options available.

I dropped into the console and checked around. lsb_release and /etc/fedora-release both say Fedora 39, however, running dnf upgrade --refresh attempts to download from the Fedora 38 repos.

I ran dnf install @kde-desktop and that installed some “missing” KDE packages (the F38 versions) and upon a reboot I could log back in again, but I cannot find a way to resolve the huge package mix up.

Discover, in KDE, can see that there are a lot of package upgrades available, but fails to install any of them because of a huge number of files belonging to other packages that it can’t resolve.

Some system information. Let me know if there is anything else that would be helpful

> df -h
Filesystem                               Size  Used Avail Use% Mounted on
devtmpfs                                 4.0M     0  4.0M   0% /dev
tmpfs                                     16G  159M   16G   1% /dev/shm
tmpfs                                    6.3G  2.2M  6.3G   1% /run
tmpfs                                    4.0M     0  4.0M   0% /sys/fs/cgroup
efivarfs                                 128K   47K   77K  39% /sys/firmware/efi/efivars
/dev/mapper/fedora_localhost--live-root   49G   21G   26G  45% /
tmpfs                                     16G  8.2M   16G   1% /tmp
/dev/nvme0n1p2                           974M  310M  597M  35% /boot
/dev/nvme0n1p1                           200M   18M  183M   9% /boot/efi
/dev/mapper/fedora_localhost--live-var   147G   58G   82G  42% /var
/dev/mapper/fedora_localhost--live-home  612G  468G  115G  81% /home
tmpfs                                    3.2G  5.0M  3.2G   1% /run/user/1000

> lsb_release -a
LSB Version:    :core-4.1-amd64:core-4.1-noarch:cxx-4.1-amd64:cxx-4.1-noarch:desktop-4.1-amd64:desktop-4.1-noarch:languages-4.1-amd64:languages-4.1-noarch:printing-4.1-amd64:printing-4.1-noarch
Distributor ID: Fedora
Description:    Fedora release 39 (Thirty Nine)
Release:        39
Codename:       ThirtyNine

> cat /etc/fedora-release
Fedora release 39 (Thirty Nine)

sudo dnf upgrade --refresh --allowerasing --skip-broken  --best --downloadonly -y
Node.js Packages for Fedora Linux 38 - x86_64                                                                                                                                                                4.8 kB/s | 2.5 kB     00:00
Docker CE Stable - x86_64                                                                                                                                                                                     22 kB/s | 3.5 kB     00:00
Fedora 38 - x86_64                                                                                                                                                                                           3.7 kB/s | 4.0 kB     00:01
Fedora 38 openh264 (From Cisco) - x86_64                                                                                                                                                                     1.2 kB/s | 989  B     00:00
Fedora Modular 38 - x86_64                                                                                                                                                                                   5.2 kB/s | 3.9 kB     00:00
Fedora 38 - x86_64 - Updates                                                                                                                                                                                 6.1 kB/s | 4.7 kB     00:00
Fedora Modular 38 - x86_64 - Updates                                                                                                                                                                         5.4 kB/s | 3.9 kB     00:00
google-chrome                                                                                                                                                                                                3.3 kB/s | 1.3 kB     00:00
RPM Fusion for Fedora 38 - Free                                                                                                                                                                              7.6 kB/s |  11 kB     00:01
RPM Fusion for Fedora 38 - Free - Updates                                                                                                                                                                    9.0 kB/s |  10 kB     00:01
RPM Fusion for Fedora 38 - Nonfree                                                                                                                                                                            16 kB/s |  16 kB     00:01
RPM Fusion for Fedora 38 - Nonfree - Updates                                                                                                                                                                  13 kB/s |  14 kB     00:01
Sublime Text - x86_64 - Stable                                                                                                                                                                               2.5 kB/s | 2.9 kB     00:01
Visual Studio Code                                                                                                                                                                                           3.4 kB/s | 1.5 kB     00:00
Dependencies resolved.
Nothing to do.
Complete!

> sudo dnf system-upgrade download --refresh --releasever=39
Before you continue ensure that your system is fully upgraded by running "dnf --refresh upgrade". Do you want to continue [y/N]: y
Node.js Packages for Fedora Linux 38 - x86_64                                                                                                                                                                455 kB/s | 232 kB     00:00
Docker CE Stable - x86_64                                                                                                                                                                                     42 kB/s | 3.5 kB     00:00
Fedora 39 - x86_64                                                                                                                                                                                           4.0 kB/s | 3.0 kB     00:00
Fedora 39 openh264 (From Cisco) - x86_64                                                                                                                                                                     1.2 kB/s | 989  B     00:00
Fedora Modular 39 - x86_64                                                                                                                                                                                   4.0 kB/s | 3.0 kB     00:00
Fedora 39 - x86_64 - Updates                                                                                                                                                                                 5.6 MB/s |  13 MB     00:02
Fedora Modular 39 - x86_64 - Updates                                                                                                                                                                         1.0 MB/s | 1.7 MB     00:01
google-chrome                                                                                                                                                                                                6.1 kB/s | 3.6 kB     00:00
RPM Fusion for Fedora 39 - Free                                                                                                                                                                              262 kB/s | 639 kB     00:02
RPM Fusion for Fedora 39 - Free - Updates                                                                                                                                                                     34 kB/s |  66 kB     00:01
RPM Fusion for Fedora 39 - Nonfree                                                                                                                                                                           206 kB/s | 259 kB     00:01
RPM Fusion for Fedora 39 - Nonfree - Updates                                                                                                                                                                 9.1 kB/s |  11 kB     00:01
Sublime Text - x86_64 - Stable                                                                                                                                                                               1.1 kB/s | 2.2 kB     00:01
Visual Studio Code                                                                                                                                                                                           2.1 MB/s | 3.9 MB     00:01
Modular dependency problem:

Problem: conflicting requests
- nothing provides module(platform:f38) needed by module postgresql:12:3820230217073827:75741a8b.x86_64 from @modulefailsafe
No match for group package "gimp-heif-plugin"
No match for group package "iwl105-firmware"
No match for group package "thai-scalable-garuda-fonts"
No match for group package "eosrei-emojione-fonts"
No match for group package "thai-scalable-norasi-fonts"
No match for group package "baekmuk-ttf-gulim-fonts"
No match for group package "samyak-devanagari-fonts"
No match for group package "baekmuk-ttf-batang-fonts"
No match for group package "thai-scalable-umpush-fonts"
No match for group package "baekmuk-ttf-hline-fonts"
No match for group package "libertas-usb8388-firmware"
No match for group package "lohit-nepali-fonts"
No match for group package "nafees-naskh-fonts"
No match for group package "baekmuk-ttf-dotum-fonts"
No match for group package "thai-scalable-purisa-fonts"
No match for group package "thai-scalable-kinnari-fonts"
No match for group package "iwl7260-firmware"
No match for group package "fontawesome-fonts"
No match for group package "iwl5000-firmware"
No match for group package "iwl5150-firmware"
No match for group package "lohit-tamil-classical-fonts"
No match for group package "samyak-malayalam-fonts"
No match for group package "iwlax2xx-firmware"
No match for group package "nafees-nastaleeq-fonts"
No match for group package "iwl6000g2a-firmware"
No match for group package "iwl6000-firmware"
No match for group package "iwl3160-firmware"
No match for group package "thai-scalable-sawasdee-fonts"
No match for group package "thai-scalable-loma-fonts"
No match for group package "iwl2030-firmware"
No match for group package "nafees-riqa-fonts"
No match for group package "samyak-tamil-fonts"
No match for group package "thai-scalable-tlwgtypist-fonts"
No match for group package "samyak-odia-fonts"
No match for group package "thai-scalable-tlwgtypewriter-fonts"
No match for group package "lohit-malayalam-fonts"
No match for group package "iwl135-firmware"
No match for group package "nafees-pakistani-naskh-fonts"
No match for group package "cdac-sakal-marathi-fonts"
No match for group package "iwl3945-firmware"
No match for group package "iwl6000g2b-firmware"
No match for group package "thai-scalable-tlwgmono-fonts"
No match for group package "iwl4965-firmware"
No match for group package "iwl1000-firmware"
No match for group package "nafees-pakistani-web-naskh-fonts"
No match for group package "thai-scalable-laksaman-fonts"
No match for group package "iwl6050-firmware"
No match for group package "iwl100-firmware"
No match for group package "multican"
No match for group package "thai-scalable-tlwgtypo-fonts"
No match for group package "samyak-gujarati-fonts"
No match for group package "paktype-ajrak-fonts"
No match for group package "iwl2000-firmware"
No match for group package "nafees-tehreer-naskh-fonts"
No match for group package "nafees-web-naskh-fonts"
No match for group package "kalapi-fonts"
Error:
Problem: The operation would result in removing the following protected packages: dnf, grub2-tools-minimal, setup, sudo, systemd, systemd-udev
(try to add '--skip-broken' to skip uninstallable packages)

espadav8 · November 15, 2023, 2:54am

Doing some more digging around and checking for unsatisfied packages gives 503 errors

root@localhost:/etc# dnf repoquery --unsatisfied
Last metadata expiration check: 0:04:45 ago on Wed 15 Nov 2023 13:46:31 AEDT.

Problem 1: package NetworkManager-adsl-1:1.42.8-1.fc38.x86_64 from @System requires NetworkManager(x86-64) = 1:1.42.8-1.fc38, but none of the providers can be installed
- cannot install both NetworkManager-1:1.44.2-1.fc39.x86_64 from @System and NetworkManager-1:1.42.8-1.fc38.x86_64 from @System
- problem with installed package NetworkManager-adsl-1:1.42.8-1.fc38.x86_64
- problem with installed package NetworkManager-1:1.44.2-1.fc39.x86_64
Problem 2: cannot install both NetworkManager-libnm-1:1.44.2-1.fc39.x86_64 from @System and NetworkManager-libnm-1:1.42.8-1.fc38.x86_64 from @System
- NetworkManager-libnm-1:1.42.8-1.fc38.i686 from @System  does not belong to a distupgrade repository
- problem with installed package NetworkManager-libnm-1:1.44.2-1.fc39.x86_64
- problem with installed package NetworkManager-libnm-1:1.42.8-1.fc38.i686
Problem 3: cannot install both NetworkManager-wwan-1:1.44.2-1.fc39.x86_64 from @System and NetworkManager-wwan-1:1.42.8-1.fc38.x86_64 from @System
- package NetworkManager-bluetooth-1:1.42.8-1.fc38.x86_64 from @System requires NetworkManager-wwan = 1:1.42.8-1.fc38, but none of the providers can be installed
- problem with installed package NetworkManager-wwan-1:1.44.2-1.fc39.x86_64
- problem with installed package NetworkManager-bluetooth-1:1.42.8-1.fc38.x86_64
Problem 4: package PackageKit-command-not-found-1.2.6-6.fc38.x86_64 from @System requires PackageKit = 1.2.6-6.fc38, but none of the providers can be installed
- cannot install both PackageKit-1.2.6-11.fc39.x86_64 from @System and PackageKit-1.2.6-6.fc38.x86_64 from @System
- problem with installed package PackageKit-command-not-found-1.2.6-6.fc38.x86_64
- problem with installed package PackageKit-1.2.6-11.fc39.x86_64
Problem 5: package PackageKit-gstreamer-plugin-1.2.6-6.fc38.x86_64 from @System requires PackageKit-glib(x86-64) = 1.2.6-6.fc38, but none of the providers can be installed
- cannot install both PackageKit-glib-1.2.6-11.fc39.x86_64 from @System and PackageKit-glib-1.2.6-6.fc38.x86_64 from @System
- problem with installed package PackageKit-gstreamer-plugin-1.2.6-6.fc38.x86_64
- problem with installed package PackageKit-glib-1.2.6-11.fc39.x86_64
Problem 6: cannot install both SDL2-2.26.5-2.fc39.x86_64 from @System and SDL2-2.26.3-1.fc38.x86_64 from @System
- SDL2-2.26.3-1.fc38.i686 from @System  does not belong to a distupgrade repository
- problem with installed package SDL2-2.26.5-2.fc39.x86_64
- problem with installed package SDL2-2.26.3-1.fc38.i686
Problem 7: cannot install both abrt-libs-2.17.1-3.fc39.x86_64 from @System and abrt-libs-2.17.1-1.fc38.x86_64 from @System
- package abrt-2.17.1-1.fc38.x86_64 from @System requires abrt-libs = 2.17.1-1.fc38, but none of the providers can be installed
- problem with installed package abrt-libs-2.17.1-3.fc39.x86_64
- problem with installed package abrt-2.17.1-1.fc38.x86_64
Problem 8: cannot install both at-spi2-atk-2.50.0-1.fc39.x86_64 from @System and at-spi2-atk-2.48.3-1.fc38.x86_64 from @System
- at-spi2-atk-2.48.3-1.fc38.i686 from @System  does not belong to a distupgrade repository
- problem with installed package at-spi2-atk-2.50.0-1.fc39.x86_64
- problem with installed package at-spi2-atk-2.48.3-1.fc38.i686
Problem 9: cannot install both at-spi2-core-2.50.0-1.fc39.x86_64 from @System and at-spi2-core-2.48.3-1.fc38.x86_64 from @System
- at-spi2-core-2.48.3-1.fc38.i686 from @System  does not belong to a distupgrade repository
- problem with installed package at-spi2-core-2.50.0-1.fc39.x86_64
- problem with installed package at-spi2-core-2.48.3-1.fc38.i686
Problem 10: cannot install both atk-2.50.0-1.fc39.x86_64 from @System and atk-2.48.3-1.fc38.x86_64 from @System
- atk-2.48.3-1.fc38.i686 from @System  does not belong to a distupgrade repository
- problem with installed package atk-2.50.0-1.fc39.x86_64
- problem with installed package atk-2.48.3-1.fc38.i686
Problem 11: cannot install both audit-libs-3.1.2-4.fc39.x86_64 from @System and audit-libs-3.1.2-1.fc38.x86_64 from @System
- package audit-3.1.2-1.fc38.x86_64 from @System requires audit-libs(x86-64) = 3.1.2-1.fc38, but none of the providers can be installed
- problem with installed package audit-libs-3.1.2-4.fc39.x86_64
- problem with installed package audit-3.1.2-1.fc38.x86_64
Problem 12: package autokey-qt-0.95.10-10.fc38.noarch from @System requires autokey-common = 0.95.10-10.fc38, but none of the providers can be installed
- cannot install both autokey-common-0.96.0-3.fc39.noarch from @System and autokey-common-0.95.10-10.fc38.noarch from @System
- problem with installed package autokey-qt-0.95.10-10.fc38.noarch
- problem with installed package autokey-common-0.96.0-3.fc39.noarch
Problem 13: cannot install both avahi-libs-0.8-24.fc39.x86_64 from @System and avahi-libs-0.8-22.fc38.x86_64 from @System
- avahi-libs-0.8-22.fc38.i686 from @System  does not belong to a distupgrade repository
- problem with installed package avahi-libs-0.8-24.fc39.x86_64
- problem with installed package avahi-libs-0.8-22.fc38.i686
Problem 14: package bluez-cups-5.70-1.fc38.x86_64 from @System requires bluez(x86-64) = 5.70-1.fc38, but none of the providers can be installed
- cannot install both bluez-5.70-1.fc39.x86_64 from @System and bluez-5.70-1.fc38.x86_64 from @System
- problem with installed package bluez-cups-5.70-1.fc38.x86_64
- problem with installed package bluez-5.70-1.fc39.x86_64
Problem 15: cannot install both bluez-libs-5.70-1.fc39.x86_64 from @System and bluez-libs-5.70-1.fc38.x86_64 from @System
- bluez-libs-5.70-1.fc38.i686 from @System  does not belong to a distupgrade repository
- problem with installed package bluez-libs-5.70-1.fc39.x86_64
- problem with installed package bluez-libs-5.70-1.fc38.i686
Problem 16: package breeze-gtk-gtk2-5.27.9-1.fc38.noarch from @System requires breeze-gtk-common = 5.27.9-1.fc38, but none of the providers can be installed
- cannot install both breeze-gtk-common-5.27.9-1.fc39.noarch from @System and breeze-gtk-common-5.27.9-1.fc38.noarch from @System
- problem with installed package breeze-gtk-gtk2-5.27.9-1.fc38.noarch
- problem with installed package breeze-gtk-common-5.27.9-1.fc39.noarch

// snip

Problem 501: problem with installed package swtpm-selinux-0.8.1-1.fc38.noarch
- package swtpm-selinux-0.8.1-1.fc38.noarch from @System requires selinux-policy >= 38.24-1.fc38, but none of the providers can be installed
- package swtpm-selinux-0.8.1-3.fc39.noarch from @System requires selinux-policy >= 38.24-1.fc39, but none of the providers can be installed
- package selinux-policy-38.30-1.fc38.noarch from @System requires rpm-plugin-selinux, but none of the providers can be installed
- package selinux-policy-39.1-1.fc39.noarch from @System requires rpm-plugin-selinux, but none of the providers can be installed
- package rpm-plugin-selinux-4.18.1-3.fc38.x86_64 from @System requires librpm.so.9()(64bit), but none of the providers can be installed
- package rpm-plugin-selinux-4.18.1-3.fc38.x86_64 from @System requires librpmio.so.9()(64bit), but none of the providers can be installed
- package rpm-plugin-selinux-4.18.1-3.fc38.x86_64 from @System requires rpm-libs(x86-64) = 4.18.1-3.fc38, but none of the providers can be installed
- cannot install both rpm-libs-4.19.0-1.fc39.x86_64 from @System and rpm-libs-4.18.1-3.fc38.x86_64 from @System
- package python3-rpm-4.19.0-1.fc39.x86_64 from @System requires librpm.so.10()(64bit), but none of the providers can be installed
- package python3-rpm-4.19.0-1.fc39.x86_64 from @System requires librpmio.so.10()(64bit), but none of the providers can be installed
- package python3-rpm-4.19.0-1.fc39.x86_64 from @System requires rpm-libs(x86-64) = 4.19.0-1.fc39, but none of the providers can be installed
- package python3-meh-0.51-3.fc39.noarch from @System requires python3-rpm, but none of the providers can be installed
- problem with installed package python3-meh-0.51-1.fc38.noarch
- package python3-meh-0.51-1.fc38.noarch from @System requires python(abi) = 3.11, but none of the providers can be installed
- package python3-rpm-4.18.1-3.fc38.x86_64 from @System requires python(abi) = 3.11, but none of the providers can be installed
- cannot install both python3-3.12.0-1.fc39.x86_64 from @System and python3-3.11.6-1.fc38.x86_64 from @System
- package python3-brlapi-0.8.5-4.fc39.x86_64 from @System requires python(abi) = 3.12, but none of the providers can be installed
- problem with installed package python3-brlapi-0.8.4-10.fc38.x86_64
- package python3-brlapi-0.8.4-10.fc38.x86_64 from @System requires brlapi(x86-64) = 0.8.4-10.fc38, but none of the providers can be installed
- cannot install both brlapi-0.8.5-4.fc39.x86_64 from @System and brlapi-0.8.4-10.fc38.x86_64 from @System
- problem with installed package brlapi-0.8.5-4.fc39.x86_64
Problem 502: problem with installed package smartmontools-selinux-1:7.4-2.fc38.noarch
- package smartmontools-selinux-1:7.4-2.fc38.noarch from @System requires selinux-policy >= 38.29-1.fc38, but none of the providers can be installed
- package smartmontools-selinux-1:7.4-2.fc39.noarch from @System requires selinux-policy >= 38.29-1.fc39, but none of the providers can be installed
- package selinux-policy-38.30-1.fc38.noarch from @System requires rpm-plugin-selinux, but none of the providers can be installed
- package selinux-policy-39.1-1.fc39.noarch from @System requires rpm-plugin-selinux, but none of the providers can be installed
- package rpm-plugin-selinux-4.18.1-3.fc38.x86_64 from @System requires librpm.so.9()(64bit), but none of the providers can be installed
- package rpm-plugin-selinux-4.18.1-3.fc38.x86_64 from @System requires librpmio.so.9()(64bit), but none of the providers can be installed
- package rpm-plugin-selinux-4.18.1-3.fc38.x86_64 from @System requires rpm-libs(x86-64) = 4.18.1-3.fc38, but none of the providers can be installed
- cannot install both rpm-libs-4.19.0-1.fc39.x86_64 from @System and rpm-libs-4.18.1-3.fc38.x86_64 from @System
- package libdnf-0.72.0-1.fc39.x86_64 from @System requires librpm.so.10()(64bit), but none of the providers can be installed
- package libdnf-0.72.0-1.fc39.x86_64 from @System requires librpmio.so.10()(64bit), but none of the providers can be installed
- package python3-libdnf-0.72.0-1.fc39.x86_64 from @System requires libdnf(x86-64) = 0.72.0-1.fc39, but none of the providers can be installed
- problem with installed package python3-libdnf-0.72.0-1.fc38.x86_64
- package python3-libdnf-0.72.0-1.fc38.x86_64 from @System requires python(abi) = 3.11, but none of the providers can be installed
- cannot install both python3-3.12.0-1.fc39.x86_64 from @System and python3-3.11.6-1.fc38.x86_64 from @System
- package python3-file-magic-5.44-5.fc39.noarch from @System requires python(abi) = 3.12, but none of the providers can be installed
- problem with installed package python3-file-magic-5.44-3.fc38.noarch
- package python3-file-magic-5.44-3.fc38.noarch from @System requires file-libs = 5.44-3.fc38, but none of the providers can be installed
- cannot install both file-libs-5.44-5.fc39.x86_64 from @System and file-libs-5.44-3.fc38.x86_64 from @System
- problem with installed package file-libs-5.44-5.fc39.x86_64
Problem 503: problem with installed package mysql-selinux-1.0.7-2.fc38.noarch
- package mysql-selinux-1.0.7-2.fc38.noarch from @System requires selinux-policy >= 38.28-1.fc38, but none of the providers can be installed
- package mysql-selinux-1.0.7-2.fc39.noarch from @System requires selinux-policy >= 38.28-1.fc39, but none of the providers can be installed
- package selinux-policy-38.30-1.fc38.noarch from @System requires rpm-plugin-selinux, but none of the providers can be installed
- package selinux-policy-39.1-1.fc39.noarch from @System requires rpm-plugin-selinux, but none of the providers can be installed
- package rpm-plugin-selinux-4.18.1-3.fc38.x86_64 from @System requires librpm.so.9()(64bit), but none of the providers can be installed
- package rpm-plugin-selinux-4.18.1-3.fc38.x86_64 from @System requires librpmio.so.9()(64bit), but none of the providers can be installed
- package rpm-plugin-selinux-4.18.1-3.fc38.x86_64 from @System requires rpm-libs(x86-64) = 4.18.1-3.fc38, but none of the providers can be installed
- cannot install both rpm-libs-4.19.0-1.fc39.x86_64 from @System and rpm-libs-4.18.1-3.fc38.x86_64 from @System
- package libdnf-0.72.0-1.fc39.x86_64 from @System requires librpm.so.10()(64bit), but none of the providers can be installed
- package libdnf-0.72.0-1.fc39.x86_64 from @System requires librpmio.so.10()(64bit), but none of the providers can be installed
- package python3-hawkey-0.72.0-1.fc39.x86_64 from @System requires libdnf(x86-64) = 0.72.0-1.fc39, but none of the providers can be installed
- problem with installed package python3-hawkey-0.72.0-1.fc38.x86_64
- package python3-hawkey-0.72.0-1.fc38.x86_64 from @System requires python(abi) = 3.11, but none of the providers can be installed
- cannot install both python3-3.12.0-1.fc39.x86_64 from @System and python3-3.11.6-1.fc38.x86_64 from @System
- package python3-blockdev-3.0.4-1.fc39.x86_64 from @System requires python(abi) = 3.12, but none of the providers can be installed
- problem with installed package python3-blockdev-2.28-5.fc38.x86_64
- package python3-blockdev-2.28-5.fc38.x86_64 from @System requires libblockdev(x86-64) = 2.28-5.fc38, but none of the providers can be installed
- cannot install both libblockdev-3.0.4-1.fc39.x86_64 from @System and libblockdev-2.28-5.fc38.x86_64 from @System
- problem with installed package libblockdev-3.0.4-1.fc39.x86_64

espadav8 · November 15, 2023, 2:56am

And it looks like every single package is a duplicate

root@localhost:/etc# dnf repoquery --duplicates
Last metadata expiration check: 0:07:00 ago on Wed 15 Nov 2023 13:46:31 AEDT.
GeoIP-0:1.6.12-13.fc38.x86_64
GeoIP-0:1.6.12-15.fc39.x86_64
GeoIP-GeoLite-data-0:2018.06-11.fc38.noarch
GeoIP-GeoLite-data-0:2018.06-13.fc39.noarch
GraphicsMagick-0:1.3.40-1.fc38.x86_64
GraphicsMagick-0:1.3.40-3.fc39.x86_64
GraphicsMagick-c++-0:1.3.40-1.fc38.x86_64
GraphicsMagick-c++-0:1.3.40-3.fc39.x86_64
ImageMagick-1:7.1.1.15-1.fc38.x86_64
ImageMagick-1:7.1.1.15-1.fc39.x86_64
ImageMagick-c++-1:7.1.1.15-1.fc38.x86_64
ImageMagick-c++-1:7.1.1.15-1.fc39.x86_64
ImageMagick-libs-1:7.1.1.15-1.fc38.x86_64
ImageMagick-libs-1:7.1.1.15-1.fc39.x86_64
LibRaw-0:0.21.1-4.fc38.x86_64
LibRaw-0:0.21.1-5.fc39.x86_64
ModemManager-0:1.20.6-1.fc38.x86_64
ModemManager-0:1.20.6-3.fc39.x86_64
ModemManager-glib-0:1.20.6-1.fc38.x86_64
ModemManager-glib-0:1.20.6-3.fc39.x86_64
NetworkManager-1:1.42.8-1.fc38.x86_64
NetworkManager-1:1.44.2-1.fc39.x86_64
NetworkManager-config-connectivity-fedora-1:1.42.8-1.fc38.noarch
NetworkManager-config-connectivity-fedora-1:1.44.2-1.fc39.noarch
NetworkManager-libnm-1:1.42.8-1.fc38.i686
NetworkManager-libnm-1:1.42.8-1.fc38.x86_64
NetworkManager-libnm-1:1.44.2-1.fc39.x86_64
NetworkManager-libreswan-0:1.2.16-3.fc38.x86_64
NetworkManager-libreswan-0:1.2.16-4.fc39.x86_64
NetworkManager-openconnect-0:1.2.10-1.fc38.x86_64
NetworkManager-openconnect-0:1.2.10-2.fc39.x86_64
NetworkManager-openvpn-1:1.10.2-2.fc38.x86_64
NetworkManager-openvpn-1:1.10.2-3.fc39.x86_64
NetworkManager-pptp-1:1.2.10-3.fc38.x86_64
NetworkManager-pptp-1:1.2.12-3.fc39.x86_64
NetworkManager-team-1:1.42.8-1.fc38.x86_64
NetworkManager-team-1:1.44.2-1.fc39.x86_64
NetworkManager-vpnc-1:1.2.8-3.fc38.x86_64
NetworkManager-vpnc-1:1.2.8-4.fc39.x86_64
NetworkManager-wifi-1:1.42.8-1.fc38.x86_64
NetworkManager-wifi-1:1.44.2-1.fc39.x86_64
NetworkManager-wwan-1:1.42.8-1.fc38.x86_64
NetworkManager-wwan-1:1.44.2-1.fc39.x86_64
PackageKit-0:1.2.6-11.fc39.x86_64
PackageKit-0:1.2.6-6.fc38.x86_64
PackageKit-Qt5-0:1.1.1-2.fc38.x86_64
PackageKit-Qt5-0:1.1.1-2.fc39.x86_64
PackageKit-glib-0:1.2.6-11.fc39.x86_64
PackageKit-glib-0:1.2.6-6.fc38.x86_64
SDL2-0:2.26.3-1.fc38.i686
SDL2-0:2.26.3-1.fc38.x86_64
SDL2-0:2.26.5-2.fc39.x86_64
SDL2_gfx-0:1.0.4-11.fc39.x86_64
SDL2_gfx-0:1.0.4-9.fc38.x86_64
SDL2_image-0:2.6.3-1.fc38.x86_64
SDL2_image-0:2.6.3-3.fc39.x86_64
SDL2_ttf-0:2.20.2-1.fc38.x86_64
SDL2_ttf-0:2.20.2-2.fc39.x86_64
SLOF-0:20210217-6.git33a7322d.fc38.noarch
SLOF-0:20220719-1.git6b6c16b4.fc39.noarch
aajohan-comfortaa-fonts-0:3.101-10.fc39.noarch
aajohan-comfortaa-fonts-0:3.101-9.fc38.noarch
aalib-libs-0:1.4.0-0.45.rc5.fc38.x86_64
aalib-libs-0:1.4.0-0.47.rc5.fc39.x86_64
abattis-cantarell-fonts-0:0.301-10.fc39.noarch
abattis-cantarell-fonts-0:0.301-9.fc38.noarch
abattis-cantarell-vf-fonts-0:0.301-10.fc39.noarch
abattis-cantarell-vf-fonts-0:0.301-9.fc38.noarch
abrt-libs-0:2.17.1-1.fc38.x86_64
abrt-libs-0:2.17.1-3.fc39.x86_64
abseil-cpp-0:20220623.1-4.fc38.x86_64
abseil-cpp-0:20230802.1-1.fc39.x86_64
accounts-qml-module-0:0.7-10.fc39.x86_64
accounts-qml-module-0:0.7-9.fc38.x86_64
accountsservice-0:23.11.69-2.fc38.x86_64
accountsservice-0:23.13.9-2.fc39.x86_64
accountsservice-libs-0:23.11.69-2.fc38.x86_64
accountsservice-libs-0:23.13.9-2.fc39.x86_64
acl-0:2.3.1-6.fc38.x86_64
acl-0:2.3.1-8.fc39.x86_64
adcli-0:0.9.2-2.fc38.x86_64
adcli-0:0.9.2-3.fc39.x86_64
adobe-mappings-cmap-0:20230622-1.fc38.noarch
adobe-mappings-cmap-0:20230622-1.fc39.noarch
adobe-mappings-cmap-deprecated-0:20230622-1.fc38.noarch
adobe-mappings-cmap-deprecated-0:20230622-1.fc39.noarch
adobe-mappings-pdf-0:20190401-3.fc38.noarch
adobe-mappings-pdf-0:20190401-5.fc39.noarch
adobe-source-code-pro-fonts-0:2.042.1.062.1.026-2.fc38.noarch
adobe-source-code-pro-fonts-0:2.042.1.062.1.026-2.fc39.noarch
adwaita-cursor-theme-0:44.0-1.fc38.noarch
adwaita-cursor-theme-0:45.0-1.fc39.noarch
adwaita-icon-theme-0:44.0-1.fc38.noarch
adwaita-icon-theme-0:45.0-1.fc39.noarch
adwaita-qt5-0:1.4.2-2.fc38.x86_64
adwaita-qt5-0:1.4.2-5.fc39.x86_64
aha-0:0.5.1-7.fc38.x86_64
aha-0:0.5.1-8.fc39.x86_64
alsa-lib-0:1.2.10-2.fc38.i686
alsa-lib-0:1.2.10-2.fc38.x86_64
alsa-lib-0:1.2.10-3.fc39.i686
alsa-lib-0:1.2.10-3.fc39.x86_64
alsa-sof-firmware-0:2.2.6-1.fc39.noarch
alsa-sof-firmware-0:2023.09-1.fc38.noarch
alsa-ucm-0:1.2.10-2.fc38.noarch
alsa-ucm-0:1.2.10-3.fc39.noarch
alternatives-0:1.25-1.fc38.x86_64
alternatives-0:1.25-1.fc39.x86_64
amd-gpu-firmware-0:20231030-1.fc38.noarch
amd-gpu-firmware-0:20231030-1.fc39.noarch
amd-ucode-firmware-0:20231030-1.fc38.noarch
amd-ucode-firmware-0:20231030-1.fc39.noarch
anaconda-user-help-0:26.2-4.fc38.noarch
anaconda-user-help-0:26.2-6.fc39.noarch
annobin-docs-0:12.24-1.fc39.noarch
annobin-docs-0:12.27-1.fc38.noarch
annobin-plugin-gcc-0:12.24-1.fc39.x86_64
annobin-plugin-gcc-0:12.27-1.fc38.x86_64
ansible-srpm-macros-0:1-10.fc38.noarch
ansible-srpm-macros-0:1-11.fc39.noarch
anthy-0:9100h-50.fc38.x86_64
anthy-0:9100h-51.fc39.x86_64
anthy-unicode-0:1.0.0.20211224-10.fc39.x86_64
anthy-unicode-0:1.0.0.20211224-9.fc38.x86_64
antiword-0:0.37-35.fc38.x86_64
antiword-0:0.37-36.fc39.x86_64
appstream-0:0.16.1-1.fc38.x86_64
appstream-0:0.16.1-4.fc39.x86_64
appstream-data-0:38-6.fc38.noarch
appstream-data-0:39-5.fc39.noarch
appstream-qt-0:0.16.1-1.fc38.x86_64
appstream-qt-0:0.16.1-4.fc39.x86_64
apr-0:1.7.2-2.fc38.x86_64
apr-0:1.7.3-2.fc39.x86_64
apr-util-0:1.6.3-2.fc38.x86_64
apr-util-0:1.6.3-4.fc39.x86_64
apr-util-bdb-0:1.6.3-2.fc38.x86_64
apr-util-bdb-0:1.6.3-4.fc39.x86_64
apr-util-openssl-0:1.6.3-2.fc38.x86_64
apr-util-openssl-0:1.6.3-4.fc39.x86_64
aspell-12:0.60.8-11.fc38.x86_64
aspell-12:0.60.8-12.fc39.x86_64
aspell-en-50:2020.12.07-7.fc38.x86_64
aspell-en-50:2020.12.07-8.fc39.x86_64
at-0:3.2.5-5.fc38.x86_64
at-0:3.2.5-7.fc39.x86_64
at-spi2-atk-0:2.48.3-1.fc38.i686
at-spi2-atk-0:2.48.3-1.fc38.x86_64
at-spi2-atk-0:2.50.0-1.fc39.x86_64
at-spi2-core-0:2.48.3-1.fc38.i686
at-spi2-core-0:2.48.3-1.fc38.x86_64
at-spi2-core-0:2.50.0-1.fc39.x86_64
atheros-firmware-0:20231030-1.fc38.noarch
atheros-firmware-0:20231030-1.fc39.noarch
atk-0:2.48.3-1.fc38.i686
atk-0:2.48.3-1.fc38.x86_64
atk-0:2.50.0-1.fc39.x86_64
atkmm-0:2.28.3-2.fc38.x86_64
atkmm-0:2.28.3-3.fc39.x86_64
atmel-firmware-0:1.3-29.fc38.noarch
atmel-firmware-0:1.3-30.fc39.noarch
attr-0:2.5.1-6.fc38.x86_64
attr-0:2.5.1-8.fc39.x86_64
audit-libs-0:3.1.2-1.fc38.x86_64
audit-libs-0:3.1.2-4.fc39.x86_64
augeas-libs-0:1.13.0-4.fc38.x86_64
augeas-libs-0:1.13.0-5.fc39.x86_64
authselect-0:1.4.3-1.fc38.x86_64
authselect-0:1.4.3-1.fc39.x86_64
authselect-libs-0:1.4.3-1.fc38.x86_64
authselect-libs-0:1.4.3-1.fc39.x86_64
autogen-libopts-0:5.18.16-16.fc38.x86_64
autogen-libopts-0:5.18.16-17.fc39.x86_64
autokey-common-0:0.95.10-10.fc38.noarch
autokey-common-0:0.96.0-3.fc39.noarch
avahi-0:0.8-22.fc38.x86_64
avahi-0:0.8-24.fc39.x86_64
avahi-compat-libdns_sd-0:0.8-22.fc38.x86_64
avahi-compat-libdns_sd-0:0.8-24.fc39.x86_64
avahi-glib-0:0.8-22.fc38.x86_64
avahi-glib-0:0.8-24.fc39.x86_64
avahi-gobject-0:0.8-22.fc38.x86_64
avahi-gobject-0:0.8-24.fc39.x86_64
avahi-libs-0:0.8-22.fc38.i686
avahi-libs-0:0.8-22.fc38.x86_64
avahi-libs-0:0.8-24.fc39.x86_64
b43-fwcutter-0:019-23.fc38.x86_64
b43-fwcutter-0:019-24.fc39.x86_64
basesystem-0:11-15.fc38.noarch
basesystem-0:11-18.fc39.noarch
bash-0:5.2.15-3.fc38.x86_64
bash-0:5.2.15-5.fc39.x86_64
bash-completion-1:2.11-12.fc39.noarch
bash-completion-1:2.11-9.fc38.noarch
bc-0:1.07.1-17.fc38.x86_64
bc-0:1.07.1-19.fc39.x86_64
biber-0:2.18-2.fc38.noarch
biber-0:2.19-3.fc39.noarch
bind-libs-32:9.18.19-1.fc38.x86_64
bind-libs-32:9.18.19-1.fc39.x86_64
bind-license-32:9.18.19-1.fc38.noarch
bind-license-32:9.18.19-1.fc39.noarch
bind-utils-32:9.18.19-1.fc38.x86_64
bind-utils-32:9.18.19-1.fc39.x86_64
binutils-0:2.39-16.fc38.x86_64
binutils-0:2.40-13.fc39.x86_64
binutils-gold-0:2.39-16.fc38.x86_64
binutils-gold-0:2.40-13.fc39.x86_64
bison-0:3.8.2-4.fc38.x86_64
bison-0:3.8.2-5.fc39.x86_64
bluez-0:5.70-1.fc38.x86_64
bluez-0:5.70-1.fc39.x86_64
bluez-libs-0:5.70-1.fc38.i686
bluez-libs-0:5.70-1.fc38.x86_64
bluez-libs-0:5.70-1.fc39.x86_64
bluez-obexd-0:5.70-1.fc38.x86_64
bluez-obexd-0:5.70-1.fc39.x86_64
bolt-0:0.9.6-1.fc38.x86_64
bolt-0:0.9.6-1.fc39.x86_64
boost-atomic-0:1.78.0-14.fc38.x86_64
boost-atomic-0:1.81.0-8.fc39.x86_64
boost-chrono-0:1.78.0-14.fc38.x86_64
boost-chrono-0:1.81.0-8.fc39.x86_64
boost-filesystem-0:1.78.0-14.fc38.x86_64
boost-filesystem-0:1.81.0-8.fc39.x86_64
boost-iostreams-0:1.78.0-14.fc38.x86_64
boost-iostreams-0:1.81.0-8.fc39.x86_64
boost-program-options-0:1.78.0-14.fc38.x86_64
boost-program-options-0:1.81.0-8.fc39.x86_64
boost-regex-0:1.78.0-14.fc38.x86_64
boost-regex-0:1.81.0-8.fc39.x86_64
boost-system-0:1.78.0-14.fc38.x86_64
boost-system-0:1.81.0-8.fc39.x86_64
boost-thread-0:1.78.0-14.fc38.x86_64
boost-thread-0:1.81.0-8.fc39.x86_64
botan2-0:2.19.3-2.fc38.x86_64
botan2-0:2.19.3-5.fc39.x86_64
brcmfmac-firmware-0:20231030-1.fc38.noarch
brcmfmac-firmware-0:20231030-1.fc39.noarch
breeze-cursor-theme-0:5.27.9-1.fc38.noarch
breeze-cursor-theme-0:5.27.9-1.fc39.noarch
breeze-gtk-common-0:5.27.9-1.fc38.noarch
breeze-gtk-common-0:5.27.9-1.fc39.noarch
breeze-gtk-gtk3-0:5.27.9-1.fc38.noarch
breeze-gtk-gtk3-0:5.27.9-1.fc39.noarch
breeze-gtk-gtk4-0:5.27.9-1.fc38.noarch
breeze-gtk-gtk4-0:5.27.9-1.fc39.noarch
breeze-icon-theme-0:5.111.0-1.fc38.noarch
breeze-icon-theme-0:5.111.0-1.fc39.noarch
bridge-utils-0:1.7.1-6.fc38.x86_64
bridge-utils-0:1.7.1-7.fc39.x86_64
brlapi-0:0.8.4-10.fc38.x86_64
brlapi-0:0.8.5-4.fc39.x86_64
brltty-0:6.5-10.fc38.x86_64
brltty-0:6.6-4.fc39.x86_64
brotli-0:1.0.9-11.fc38.i686
brotli-0:1.0.9-11.fc38.x86_64
brotli-0:1.1.0-1.fc39.x86_64
btrfs-progs-0:6.5.1-1.fc38.x86_64
btrfs-progs-0:6.5.1-1.fc39.x86_64
bubblewrap-0:0.7.0-1.fc38.x86_64
bubblewrap-0:0.7.0-2.fc39.x86_64
bzip2-0:1.0.8-13.fc38.x86_64
bzip2-0:1.0.8-16.fc39.x86_64
bzip2-libs-0:1.0.8-13.fc38.i686
bzip2-libs-0:1.0.8-13.fc38.x86_64
bzip2-libs-0:1.0.8-16.fc39.i686
bzip2-libs-0:1.0.8-16.fc39.x86_64
c-ares-0:1.19.1-1.fc38.x86_64
c-ares-0:1.19.1-1.fc39.x86_64
ca-certificates-0:2023.2.60_v7.0.306-1.0.fc38.noarch
ca-certificates-0:2023.2.60_v7.0.306-2.fc39.noarch
cairo-0:1.17.8-4.fc38.i686
cairo-0:1.17.8-4.fc38.x86_64
cairo-0:1.18.0-1.fc39.x86_64
cairo-gobject-0:1.17.8-4.fc38.i686
cairo-gobject-0:1.17.8-4.fc38.x86_64
cairo-gobject-0:1.18.0-1.fc39.x86_64
cairomm-0:1.14.5-1.fc38.x86_64
cairomm-0:1.14.5-1.fc39.x86_64
capstone-0:4.0.2-12.fc38.x86_64
capstone-0:4.0.2-15.fc39.x86_64
cdparanoia-libs-0:10.2-41.fc38.i686
cdparanoia-libs-0:10.2-41.fc38.x86_64
cdparanoia-libs-0:10.2-42.fc39.x86_64
cfitsio-0:4.2.0-3.fc38.x86_64
cfitsio-0:4.3.0-1.fc39.x86_64
checkpolicy-0:3.5-1.fc38.x86_64
checkpolicy-0:3.5-3.fc39.x86_64
chkconfig-0:1.25-1.fc38.x86_64
chkconfig-0:1.25-1.fc39.x86_64
chmlib-0:0.40-28.fc38.x86_64
chmlib-0:0.40-30.fc39.x86_64
chrony-0:4.4-1.fc38.x86_64
chrony-0:4.4-1.fc39.x86_64
cifs-utils-0:7.0-1.fc38.x86_64
cifs-utils-0:7.0-2.fc39.x86_64
cifs-utils-info-0:7.0-1.fc38.x86_64
cifs-utils-info-0:7.0-2.fc39.x86_64
clang-resource-filesystem-0:16.0.6-3.fc38.x86_64
clang-resource-filesystem-0:17.0.3-1.fc39.noarch
clang13-libs-0:13.0.1-3.fc38.x86_64
clang13-libs-0:13.0.1-4.fc39.x86_64
clang13-resource-filesystem-0:13.0.1-3.fc38.x86_64
clang13-resource-filesystem-0:13.0.1-4.fc39.x86_64
clang15-libs-0:15.0.7-5.fc38.x86_64
clang15-libs-0:15.0.7-5.fc39.x86_64
clang15-resource-filesystem-0:15.0.7-5.fc38.x86_64
clang15-resource-filesystem-0:15.0.7-5.fc39.x86_64
clinfo-0:3.0.21.02.21-5.fc38.x86_64
clinfo-0:3.0.23.01.25-2.fc39.x86_64
cmake-0:3.27.7-1.fc38.x86_64
cmake-0:3.27.7-1.fc39.x86_64
cmake-data-0:3.27.7-1.fc38.noarch
cmake-data-0:3.27.7-1.fc39.noarch
cmake-filesystem-0:3.27.7-1.fc38.x86_64
cmake-filesystem-0:3.27.7-1.fc39.x86_64
cmake-rpm-macros-0:3.27.7-1.fc38.noarch
cmake-rpm-macros-0:3.27.7-1.fc39.noarch

// snip

time-0:1.9-20.fc38.x86_64
time-0:1.9-22.fc39.x86_64
tinyxml-0:2.6.2-26.fc38.x86_64
tinyxml-0:2.6.2-27.fc39.x86_64
tinyxml2-0:9.0.0-2.fc38.x86_64
tinyxml2-0:9.0.0-3.fc39.x86_64
tk-1:8.6.12-4.fc38.x86_64
tk-1:8.6.12-5.fc39.x86_64
tmux-0:3.3a-3.fc38.x86_64
tmux-0:3.3a-5.20230918gitb202a2f.fc39.x86_64
totem-pl-parser-0:3.26.6-6.fc38.x86_64
totem-pl-parser-0:3.26.6-7.fc39.x86_64
tpm2-abrmd-selinux-0:2.3.1-7.fc38.noarch
tpm2-abrmd-selinux-0:2.3.1-8.fc39.noarch
tpm2-tools-0:5.5-3.fc38.x86_64
tpm2-tools-0:5.5-4.fc39.x86_64
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zfs-fuse-0:0.7.2.2-29.fc39.x86_64
zimg-0:3.0.5-1.fc38.x86_64
zimg-0:3.0.5-1.fc39.x86_64
zip-0:3.0-37.fc38.x86_64
zip-0:3.0-39.fc39.x86_64
zlib-0:1.2.13-3.fc38.i686
zlib-0:1.2.13-3.fc38.x86_64
zlib-0:1.2.13-4.fc39.i686
zlib-0:1.2.13-4.fc39.x86_64
zlib-devel-0:1.2.13-3.fc38.x86_64
zlib-devel-0:1.2.13-4.fc39.x86_64
zram-generator-0:1.1.2-4.fc38.x86_64
zram-generator-0:1.1.2-8.fc39.x86_64
zsh-0:5.9-7.fc38.x86_64
zsh-0:5.9-8.fc39.x86_64
zstd-0:1.5.5-1.fc38.x86_64
zstd-0:1.5.5-4.fc39.x86_64
zvbi-0:0.2.35-19.fc38.x86_64
zvbi-0:0.2.35-21.fc39.x86_64
zxing-cpp-0:1.2.0-9.fc38.x86_64
zxing-cpp-0:2.0.0-5.fc39.x86_64
zziplib-0:0.13.72-3.fc38.x86_64
zziplib-0:0.13.72-5.fc39.x86_64

chrisawi · November 15, 2023, 3:12am

To be clear, you used dnf system-upgrade?

You’ve done a great job troubleshooting so far. The reason dnf thinks you’re still on F38 is the duplicated fedora-release (or fedora-release-VARIANT) package. The first thing I’d do is try to remove the 38 version of that package.

You can then try sudo dnf remove --duplicates. If you get any errors mentioning i686 packages, remove them temporarily. I’ve found that Fedora’s multilib implementation breaks down when duplicate packages are installed.

espadav8 · November 15, 2023, 3:21am

Thanks Chris

Yes, I ran

sudo dnf system-upgrade download --refresh --releasever=39
sudo dnf system-upgrade reboot

to kick off the upgrade.

I had checked for duplicates and that threw a bunch of other errors (I thought I posted that, but looks like I missed it).

I’ll try and remove that package and see what happens

root@localhost:~# dnf remove fedora-release-38-36
Dependencies resolved.
=============================================================================================================================================================================================================================================
Package                                                              Architecture                                      Version                                          Repository                                                     Size
=============================================================================================================================================================================================================================================
Removing:
fedora-release                                                       noarch                                            38-36                                            @updates                                                        0
Removing dependent packages:
fedora-release-common                                                noarch                                            38-36                                            @updates                                                       17 k
fedora-repos                                                         noarch                                            38-1                                             @fedora                                                       4.5 k
fedora-repos-modular                                                 noarch                                            38-1                                             @fedora                                                       3.9 k
rpmfusion-free-release                                               noarch                                            38-1                                             @rpmfusion-free                                               5.6 k
rpmfusion-nonfree-release                                            noarch                                            38-1                                             @rpmfusion-nonfree                                            5.8 k

Transaction Summary
=============================================================================================================================================================================================================================================
Remove  6 Packages

Edit: Ah, I posted the list of duplicates, not what happens when I try to remove them. IIRC, it failed saying that grub2-pc would be removed.

espadav8 · November 15, 2023, 3:28am

Package has been removed. dnf is checking the F39 repos now, however, it doesn’t get very far when trying to upgrade

Node.js Packages for Fedora Linux 38 - x86_64                                                                                                                                                                 22 kB/s | 2.5 kB     00:00
Docker CE Stable - x86_64                                                                                                                                                                                     34 kB/s | 3.5 kB     00:00
Fedora 39 - x86_64                                                                                                                                                                                           2.8 kB/s | 3.0 kB     00:01
Fedora 39 openh264 (From Cisco) - x86_64                                                                                                                                                                     1.2 kB/s | 989  B     00:00
Fedora 39 - x86_64 - Updates                                                                                                                                                                                 6.4 kB/s | 4.7 kB     00:00
Fedora 39 - x86_64 - Updates                                                                                                                                                                                 342 kB/s | 465 kB     00:01
google-chrome                                                                                                                                                                                                4.5 kB/s | 1.3 kB     00:00
RPM Fusion for Fedora 39 - Free                                                                                                                                                                               11 kB/s |  11 kB     00:01
RPM Fusion for Fedora 39 - Free - Updates                                                                                                                                                                    9.0 kB/s |  10 kB     00:01
RPM Fusion for Fedora 39 - Nonfree                                                                                                                                                                           9.1 kB/s |  16 kB     00:01
RPM Fusion for Fedora 39 - Nonfree - Updates                                                                                                                                                                  12 kB/s |  14 kB     00:01
Sublime Text - x86_64 - Stable                                                                                                                                                                               3.1 kB/s | 2.9 kB     00:00
Visual Studio Code                                                                                                                                                                                           3.5 kB/s | 1.5 kB     00:00
Error:
Problem: The operation would result in removing the following protected packages: dnf

Attempting to remove duplicates

root@localhost:~# dnf remove --duplicates
Last metadata expiration check: 0:00:50 ago on Wed 15 Nov 2023 14:25:19 AEDT.
Installed package libreswan-4.12-2.fc38.x86_64 not available.
Installed package cups-libs-1:2.4.7-2.fc38.x86_64 not available.
Installed package tigervnc-server-minimal-1.13.1-6.fc38.x86_64 not available.
Installed package cups-filesystem-1:2.4.7-2.fc38.noarch not available.
Installed package jpegoptim-1.5.5-1.fc38.x86_64 not available.
Installed package unbound-libs-1.18.0-2.fc38.x86_64 not available.
Installed package mozjs102-102.15.1-1.fc38.x86_64 not available.
Installed package cups-client-1:2.4.7-2.fc38.x86_64 not available.
Installed package annobin-docs-12.27-1.fc38.noarch not available.
Installed package annobin-plugin-gcc-12.27-1.fc38.x86_64 not available.
Installed package unbound-anchor-1.18.0-2.fc38.x86_64 not available.
Installed package python3-unbound-1.18.0-2.fc38.x86_64 not available.
Installed package cups-ipptool-1:2.4.7-2.fc38.x86_64 not available.
Installed package alsa-sof-firmware-2023.09-1.fc38.noarch not available.
Installed package tigervnc-license-1.13.1-6.fc38.noarch not available.
Installed package libopenmpt-0.6.12-1.fc38.x86_64 not available.
Error:
Problem 1: problem with installed package python3-unbound-1.18.0-2.fc38.x86_64
- package python3-unbound-1.18.0-2.fc38.x86_64 from @System requires python(abi) = 3.11, but none of the providers can be installed
- conflicting requests
Problem 2: problem with installed package nodejs-full-i18n-1:20.8.1-1.fc39.x86_64
- package nodejs-full-i18n-1:20.7.0-1.fc39.x86_64 from fedora requires nodejs(x86-64) = 1:20.7.0-1.fc39, but none of the providers can be installed
- package nodejs-full-i18n-1:20.8.1-1.fc39.x86_64 from @System requires nodejs(x86-64) = 1:20.8.1-1.fc39, but none of the providers can be installed
- package nodejs-full-i18n-1:20.8.1-1.fc39.x86_64 from updates requires nodejs(x86-64) = 1:20.8.1-1.fc39, but none of the providers can be installed
- conflicting requests
Problem 3: problem with installed package nodejs-npm-1:10.1.0-1.20.8.1.1.fc39.x86_64
- package nodejs-npm-1:10.1.0-1.20.8.1.1.fc39.x86_64 from updates requires /usr/bin/node-20, but none of the providers can be installed
- package nodejs-npm-1:10.1.0-1.20.7.0.1.fc39.x86_64 from fedora requires /usr/bin/node-20, but none of the providers can be installed
- package nodejs-npm-1:10.1.0-1.20.8.1.1.fc39.x86_64 from @System requires /usr/bin/node-20, but none of the providers can be installed
- nodejs-1:20.8.1-1.fc39.i686 from updates  does not belong to a distupgrade repository
- nodejs-1:20.7.0-1.fc39.i686 from fedora  does not belong to a distupgrade repository
- cannot install both nodejs-2:20.5.1-1nodesource.x86_64 from nodesource and nodejs-1:20.8.1-1.fc39.x86_64 from @System
- cannot install both nodejs-1:20.7.0-1.fc39.x86_64 from fedora and nodejs-2:20.5.1-1nodesource.x86_64 from nodesource
- cannot install both nodejs-1:20.8.1-1.fc39.x86_64 from updates and nodejs-2:20.5.1-1nodesource.x86_64 from nodesource
- conflicting requests
(try to add '--allowerasing' to command line to replace conflicting packages or '--skip-broken' to skip uninstallable packages)

Passing in --allowerasing prompts to upgrade a load of packages and then reinstalled even more as well as removing a few

Removing:
alsa-sof-firmware                                                        noarch                               2.2.6-1.fc39                                                        @fedora                                             3.6 M
annobin-docs                                                             noarch                               12.24-1.fc39                                                        @fedora                                              95 k
annobin-plugin-gcc                                                       x86_64                               12.24-1.fc39                                                        @fedora                                             963 k
cups-client                                                              x86_64                               1:2.4.7-1.fc39                                                      @fedora                                             191 k
cups-filesystem                                                          noarch                               1:2.4.7-1.fc39                                                      @fedora                                               0
cups-ipptool                                                             x86_64                               1:2.4.7-1.fc39                                                      @fedora                                             4.4 M
cups-libs                                                                x86_64                               1:2.4.7-1.fc39                                                      @fedora                                             683 k
jpegoptim                                                                x86_64                               1.5.4-2.fc39                                                        @fedora                                              93 k
libopenmpt                                                               x86_64                               0.6.11-1.fc39                                                       @fedora                                             1.5 M
libreswan                                                                x86_64                               4.11-1.fc39.1                                                       @fedora                                             4.9 M
mozjs102                                                                 x86_64                               102.15.0-1.fc39                                                     @fedora                                              13 M
python3-unbound                                                          x86_64                               1.18.0-1.fc39                                                       @fedora                                             534 k
tigervnc-license                                                         noarch                               1.13.1-4.fc39                                                       @fedora                                              18 k
tigervnc-server-minimal                                                  x86_64                               1.13.1-4.fc39                                                       @fedora                                             2.7 M
unbound-anchor                                                           x86_64                               1.18.0-1.fc39                                                       @fedora                                              57 k
unbound-libs                                                             x86_64                               1.18.0-1.fc39                                                       @fedora                                             1.4 M
Removing dependent packages:
libgweather                                                              x86_64                               40.0-5.fc38                                                         @@System                                             22 M
nodejs-full-i18n                                                         x86_64                               1:20.8.1-1.fc39                                                     @updates                                             31 M
nodejs-npm                                                               x86_64                               1:10.1.0-1.20.8.1.1.fc39                                            @updates                                            9.5 M
python3-pyaes                                                            noarch                               1.6.1-11.fc38                                                       @@System                                            148 k
python3-slip                                                             noarch                               0.6.4-29.fc38                                                       @@System                                             74 k
python3-slip-dbus                                                        noarch                               0.6.4-29.fc38                                                       @@System                                             87 k
python3-unbound                                                          x86_64                               1.18.0-2.fc38                                                       @updates                                            533 k
qgpgme                                                                   x86_64                               1.17.1-5.fc38                                                       @updates                                            991 k

Transaction Summary
=======================
Install      6 Packages
Upgrade    297 Packages
Remove      24 Packages
Downgrade    1 Package

espadav8 · November 15, 2023, 3:43am

That got really far, but failed at the second transaction test

Running transaction check
Transaction check succeeded.
Running transaction test
The downloaded packages were saved in cache until the next successful transaction.
You can remove cached packages by executing 'dnf clean packages'.
Error: Transaction test error:
file /usr/share/licenses/libicu/LICENSE from install of libicu-73.2-2.fc39.x86_64 conflicts with file from package libicu-72.1-2.fc38.i686
file /usr/share/info/libgomp.info.gz from install of libgomp-13.2.1-4.fc39.x86_64 conflicts with file from package libgomp-13.2.1-4.fc38.i686
file /usr/share/doc/libsigc++20/NEWS from install of libsigc++20-2.12.1-1.fc39.x86_64 conflicts with file from package libsigc++20-2.10.8-3.fc38.i686
file /usr/share/doc/libv4l/ChangeLog from install of libv4l-1.25.0-3.fc39.x86_64 conflicts with file from package libv4l-1.22.1-5.fc38.i686
file /usr/share/licenses/rav1e-libs/LICENSE.dependencies from install of rav1e-libs-0.6.6-3.fc39.x86_64 conflicts with file from package rav1e-libs-0.6.6-3.fc38.i686
file /usr/share/doc/vulkan-loader/README.md from install of vulkan-loader-1.3.250.0-2.fc39.x86_64 conflicts with file from package vulkan-loader-1.3.243.0-1.fc38.i686
file /usr/share/drirc.d/00-radv-defaults.conf from install of mesa-vulkan-drivers-23.2.1-2.fc39.x86_64 conflicts with file from package mesa-vulkan-drivers-23.1.9-1.fc38.i686
file /usr/share/doc/sratom/README.md from install of sratom-0.6.14-2.fc39.x86_64 conflicts with file from package sratom-0.6.10-3.fc38.i686
file /usr/share/licenses/sratom/COPYING from install of sratom-0.6.14-2.fc39.x86_64 conflicts with file from package sratom-0.6.10-3.fc38.i686
file /usr/share/doc/lilv-libs/NEWS from install of lilv-libs-0.24.20-1.fc39.x86_64 conflicts with file from package lilv-libs-0.24.14-4.fc38.i686
file /usr/share/doc/lilv-libs/README.md from install of lilv-libs-0.24.20-1.fc39.x86_64 conflicts with file from package lilv-libs-0.24.14-4.fc38.i686
file /usr/share/licenses/lilv-libs/COPYING from install of lilv-libs-0.24.20-1.fc39.x86_64 conflicts with file from package lilv-libs-0.24.14-4.fc38.i686
file /usr/share/doc/libva/NEWS from install of libva-2.20.0-1.fc39.x86_64 conflicts with file from package libva-2.18.0-1.fc38.i686
file /usr/share/locale/da/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/de/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/de_CH/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/es/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/fi/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/gl/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/hr/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/id/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/it/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/ko/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/nl/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/nn/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/pl/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/pt_BR/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/ru/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/sv/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/tr/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/locale/uk/LC_MESSAGES/pulseaudio.mo from install of pulseaudio-libs-16.1-5.fc39.x86_64 conflicts with file from package pulseaudio-libs-16.1-4.fc38.i686
file /usr/share/doc/json-glib/NEWS from install of json-glib-1.8.0-1.fc39.x86_64 conflicts with file from package json-glib-1.6.6-4.fc38.i686
file /usr/share/locale/bg/LC_MESSAGES/json-glib-1.0.mo from install of json-glib-1.8.0-1.fc39.x86_64 conflicts with file from package json-glib-1.6.6-4.fc38.i686
file /usr/share/locale/fr/LC_MESSAGES/json-glib-1.0.mo from install of json-glib-1.8.0-1.fc39.x86_64 conflicts with file from package json-glib-1.6.6-4.fc38.i686
file /usr/share/locale/he/LC_MESSAGES/json-glib-1.0.mo from install of json-glib-1.8.0-1.fc39.x86_64 conflicts with file from package json-glib-1.6.6-4.fc38.i686
file /usr/share/locale/oc/LC_MESSAGES/json-glib-1.0.mo from install of json-glib-1.8.0-1.fc39.x86_64 conflicts with file from package json-glib-1.6.6-4.fc38.i686
file /usr/share/locale/tr/LC_MESSAGES/json-glib-1.0.mo from install of json-glib-1.8.0-1.fc39.x86_64 conflicts with file from package json-glib-1.6.6-4.fc38.i686
file /usr/share/doc/libgudev/NEWS from install of libgudev-238-2.fc39.x86_64 conflicts with file from package libgudev-237-4.fc38.i686
file /usr/share/doc/glib2/NEWS from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/doc/glib2/README.md from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/am/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/bn/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/ca/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/cs/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/da/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/de/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/dz/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/en_GB/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/eo/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/es/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/eu/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/fa/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/fr/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/gl/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/he/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/hu/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/id/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/it/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/ka/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/kk/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/ko/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/lt/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/lv/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/mg/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
file /usr/share/locale/pa/LC_MESSAGES/glib20.mo from install of glib2-2.78.1-1.fc39.x86_64 conflicts with file from package glib2-2.76.5-2.fc38.i686
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file /usr/share/locale/oc/LC_MESSAGES/glib-networking.mo from install of glib-networking-2.78.0-1.fc39.x86_64 conflicts with file from package glib-networking-2.76.1-1.fc38.i686
file /usr/share/locale/pl/LC_MESSAGES/glib-networking.mo from install of glib-networking-2.78.0-1.fc39.x86_64 conflicts with file from package glib-networking-2.76.1-1.fc38.i686
file /usr/share/locale/ro/LC_MESSAGES/glib-networking.mo from install of glib-networking-2.78.0-1.fc39.x86_64 conflicts with file from package glib-networking-2.76.1-1.fc38.i686
file /usr/share/locale/sl/LC_MESSAGES/glib-networking.mo from install of glib-networking-2.78.0-1.fc39.x86_64 conflicts with file from package glib-networking-2.76.1-1.fc38.i686
file /usr/share/locale/sv/LC_MESSAGES/glib-networking.mo from install of glib-networking-2.78.0-1.fc39.x86_64 conflicts with file from package glib-networking-2.76.1-1.fc38.i686
file /usr/share/locale/tr/LC_MESSAGES/glib-networking.mo from install of glib-networking-2.78.0-1.fc39.x86_64 conflicts with file from package glib-networking-2.76.1-1.fc38.i686
file /usr/share/locale/uk/LC_MESSAGES/glib-networking.mo from install of glib-networking-2.78.0-1.fc39.x86_64 conflicts with file from package glib-networking-2.76.1-1.fc38.i686
file /usr/lib/node_modules/npm/docs from install of nodejs-2:20.5.1-1nodesource.x86_64 conflicts with file from package nodejs-npm-1:10.1.0-1.20.8.1.1.fc39.x86_64
file /usr/lib/node_modules/npm/man from install of nodejs-2:20.5.1-1nodesource.x86_64 conflicts with file from package nodejs-npm-1:10.1.0-1.20.8.1.1.fc39.x86_64
file /usr/lib/node_modules from install of nodejs-2:20.5.1-1nodesource.x86_64 conflicts with file from package nodejs-1:20.8.1-1.fc39.x86_64
file /usr/lib/node_modules/npm/docs from install of nodejs-2:20.5.1-1nodesource.x86_64 conflicts with file from package nodejs-1:20.8.1-1.fc39.x86_64
file /usr/lib/node_modules/npm/man from install of nodejs-2:20.5.1-1nodesource.x86_64 conflicts with file from package nodejs-1:20.8.1-1.fc39.x86_64
file /usr/share/doc/libcloudproviders/CHANGELOG from install of libcloudproviders-0.3.4-1.fc39.x86_64 conflicts with file from package libcloudproviders-0.3.2-1.fc38.i686
file /usr/share/doc/libcloudproviders/README.md from install of libcloudproviders-0.3.4-1.fc39.x86_64 conflicts with file from package libcloudproviders-0.3.2-1.fc38.i686

Looks like some duplicated packages aren’t being removed full

chrisawi · November 15, 2023, 3:47am

This is the multilib problem I mentioned in my first message. Multilib packages in Fedora can co-own architecture-indepedent files, but those files must be identical. With mismatching versions installed, you get conflicts.

The only solution I know is to temporarily remove any mentioned i686 packages.

espadav8 · November 15, 2023, 3:55am

Ah, I missed that last line.

I actually started to do that by removing steam and it did progress further, so I’ll carry on removing the remaining ones and see how that goes.

Thanks again Chris

espadav8 · November 15, 2023, 4:21am

Pretty sure this isn’t a good exit code

Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-6.fc39.x86_64                                                                                                                                                                                       1/1
Running scriptlet: texlive-base-11:20230311-77.fc39.x86_64                                                                                                                                                                             1/1
Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch                                                                                                                                                                                  1/1
Running scriptlet: java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.x86_64                                                                                                                                                                 1/1
Running scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.382.b05-2.fc39.x86_64                                                                                                                                                           1/1
Running scriptlet: java-11-openjdk-headless-1:11.0.20.0.8-1.fc39.x86_64                                                                                                                                                                1/1
Running scriptlet: java-latest-openjdk-headless-1:21.0.0.0.35-1.rolling.fc39.x86_64                                                                                                                                                    1/1
Running scriptlet: golang-1.21.3-1.fc39.x86_64                                                                                                                                                                                         1/1
Running scriptlet: selinux-policy-targeted-39.1-1.fc39.noarch                                                                                                                                                                          1/1
Running scriptlet: selinux-policy-minimum-39.1-1.fc39.noarch                                                                                                                                                                           1/1
Preparing        :                                                                                                                                                                                                                     1/1
corrupted double-linked list
Aborted (core dumped)

Edit: Tried running it again and is progressing a lot better. Reinstalling a lot of packages. Will see if it code dumps again.

espadav8 · November 15, 2023, 4:39am

That has removed/replaced a lot of packages, and I can still log in after a reboot. Running sudo dnf upgrade --refresh --allowerasing --skip-broken --best --downloadonly -y && sudo dnf upgrade --allowerasing --skip-broken --best is returning a list of packages to be upgraded too, so I’ll try that next. It looks like things are getting back into shape

espadav8 · November 15, 2023, 4:57am

So, things seem to be mostly okay, however, the F39 kernel isn’t showing up on the grub menu, and the kernel image isn’t in /boot. Running grub2-mkconfig doesn’t change the menu (I’m guessing because the image doesn’t exist in /boot).

I tried removing and reinstalling the kernel package, but that didn’t seem to do anything helpful.

Edit: Ah ha. There is a kernel-core package. I ran dnf reinstall kernel-core and that correctly set up the kernel in /boot and the item appeared in the grub menu.

aikidouke · November 26, 2023, 1:09am

I know I’m several days late here, did you have any RPMFusion repos enabled? Curious.

Thanks!

computersavvy · November 26, 2023, 2:11am

Is there by chance a directory /boot/efi/
If so then that seems it may be similar to others who have had similar problems with fedora 39 and the fix would be to remove that directory and content then reinstall the kernel