Gnome-software update and check problem after upgrading to fedora41

Gnome-software update and check problem after upgrading to fedora 41
When I do gnome-software check it generates an incorrect update list. it says that software that is out of date will be updated. But it doesn’t say to upgrade or which version to upgrade to. When I click update it doesn’t update either. This problem happens with software installed from fedora’s flathub repository (registry.fedora.org) and software from repositories (for example the brave rpm package I installed with the brave repo) added later.
The other problem is that gnome-software does not check for updates. We have to update with sudo dnf update or sudo dnf5 update. So none of the functionality of gnome-software works.
Update all doesn’t work either. It says “Updating”, Refreshes, then the same packages are added to the list to be updated again.
Do I have to make a video for you to believe me?
You see, gnome-software doesn’t work anymore.



GNOME Software and dnf are using different metadata caches, and they have different configs regarding when to automatically update their metadata.

This can lead to the situation that one utility might suggest upgrades, while the other one wouldn’t. This can be seen in your second screenshot. In order to have them both display the proposed updates, one would need to request them to update their metadata: with the Refresh button in GNOME Software and with the –refresh argument in dnf (as in sudo dnf upgrade --refresh).

Regarding GNOME Software, in order to see to which version an app is being updated in the proposed update list, one would need to click on the line referring to a specific app (e.g. on the icon and not on the Update button). I also haven’t seen any issues with updating via GNOME Software, but never updated an app individually, but rather used the Update All button.

Do you mean this only happens with flatpaks (either from fedora or flathub remotes)? Can you reproduce the issue?

As a general note, for consistency, I would recommend using either GNOME Software or the terminal (with sudo dnf upgrade --refresh and flatpak update commands) for updates.

EDIT: I have assumed you’re using Fedora Workstation edition, can you confirm that?

When I do gnome-software check it generates an incorrect update list. it says that software that is out of date will be updated. But it doesn’t say to upgrade or which version to upgrade to. When I click update it doesn’t update either. This problem happens with software installed from fedora’s flathub repository and flathub repo. [ registry.fedoraproject.org and dl.flathub.org ] and software from repositories (for example the brave rpm package I installed with the brave repo) added later.
The other problem is that gnome-software does not check for updates. We have to update with sudo dnf update or sudo dnf5 update. So none of the functionality of gnome-software works.
Update all doesn’t work either. It says “Updating”, Refreshes, then the same packages are added to the list to be updated again.
Do I have to make a video for you to believe me?
You see, gnome-software doesn’t work anymore.

%  flatpak update
Güncellemeler aranıyor…

Bilgi: Çalışma ortamı org.kde.Platform, dal 6.6, ömrünün sonuna geldi, şu sebeple:
   We strongly recommend moving to the latest stable version of the Platform and SDK
Bilgi: Çalışma ortamını kullanan uygulamalar:
   br.eng.silas.qpdftools

Bilgi: Çalışma ortamı org.gnome.Platform, dal 45, ömrünün sonuna geldi, şu sebeple:
   The GNOME 45 runtime is no longer supported as of September 18, 2024. Please ask your application developer to migrate to a supported platform.
Bilgi: Çalışma ortamını kullanan uygulamalar:
   de.manuel_kehl.go-for-it


        KİMLİK                                            Dal               İş            Uzak              İndir
 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi)
 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB
 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi)
 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Pl 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi)
 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi)
 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform         1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform                                47                u             flathub           < 383,6 MB
 7. [✗] io.github.dvlv.boxbuddyrs                         stable            u             flathub           < 760,3 kB
 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform                                47                u             flathub           < 383,6 MB 7. [✗] io.github.dvlv.boxbuddyrs                         stable            u             flathub           < 760,3 kB 8. [✗] org.gnome.Platform                                46     1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform                                47                u             flathub           < 383,6 MB 7. [✗] io.github.dvlv.boxbuddyrs                         stable            u             flathub           < 760,3 kB 8. [✗] org.gnome.Platform                                46                u             flathub           < 363,2 MB
 9. [✗] org.gnome.Platform                                45                u             flathub           < 382,2 MB
 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform                                47                u             flathub           < 383,6 MB 7. [✗] io.github.dvlv.boxbuddyrs                         stable            u             flathub           < 760,3 kB 8. [✗] org.gnome.Platform                                46                u             flathub           < 363,2 MB 9. [✗] org.gnome.Platform                                45                u             flathub           < 382,2 MB10. [✗] com.brave.Browser                                 stable            u             flat 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform                                47                u             flathub           < 383,6 MB 7. [✗] io.github.dvlv.boxbuddyrs                         stable            u             flathub           < 760,3 kB 8. [✗] org.gnome.Platform                                46                u             flathub           < 363,2 MB 9. [✗] org.gnome.Platform                                45                u             flathub           < 382,2 MB10. [✗] com.brave.Browser                                 stable            u             flathub           < 178,5 MB
11. [✗] org.kde.Platform.Locale                           6.6               u             flathub           < 392,4 MB (kısmi)
 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform                                47                u             flathub           < 383,6 MB 7. [✗] io.github.dvlv.boxbuddyrs                         stable            u             flathub           < 760,3 kB 8. [✗] org.gnome.Platform                                46                u             flathub           < 363,2 MB 9. [✗] org.gnome.Platform                                45                u             flathub           < 382,2 MB10. [✗] com.brave.Browser                                 stable            u             flathub           < 178,5 MB11. [✗] org.kde.Platform.Locale                           6.6               u             flathub           < 392,4 MB (kısmi)12. [|] org.kde.Platform                                  6.6               u             flathub           < 334,4  1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform                                47                u             flathub           < 383,6 MB 7. [✗] io.github.dvlv.boxbuddyrs                         stable            u             flathub           < 760,3 kB 8. [✗] org.gnome.Platform                                46                u             flathub           < 363,2 MB 9. [✗] org.gnome.Platform                                45                u             flathub           < 382,2 MB10. [✗] com.brave.Browser                                 stable            u             flathub           < 178,5 MB11. [✗] org.kde.Platform.Locale                           6.6               u             flathub           < 392,4 MB (kısmi)12. [✗] org.kde.Platform                                  6.6               u             flathub           < 334,4 MB
13. [ ] org.shotcut.Shotcut                               stable            u             flathub           < 113,0 MB
 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform                                47                u             flathub           < 383,6 MB 7. [✗] io.github.dvlv.boxbuddyrs                         stable            u             flathub           < 760,3 kB 8. [✗] org.gnome.Platform                                46                u             flathub           < 363,2 MB 9. [✗] org.gnome.Platform                                45                u             flathub           < 382,2 MB10. [✗] com.brave.Browser                                 stable            u             flathub           < 178,5 MB11. [✗] org.kde.Platform.Locale                           6.6               u             flathub           < 392,4 MB (kısmi)12. [✗] org.kde.Platform                                  6.6               u             flathub           < 334,4  1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform                                47                u             flathub           < 383,6 MB 7. [✗] io.github.dvlv.boxbuddyrs                         stable            u             flathub           < 760,3 kB 8. [✗] org.gnome.Platform                                46                u             flathub           < 363,2 MB 9. [✗] org.gnome.Platform                                45                u             flathub           < 382,2 MB10. [✗] com.brave.Browser                                 stable            u             flathub           < 178,5 MB11. [✗] org.kde.Platform.Locale                           6.6               u             flathub           < 392,4 MB (kısmi)12. [✗] org.kde.Platform                                  6.6               u             flathub           < 334,4 MB13. [✗] org.shotcut.Shotcut                               stable            u             flathub           < 113,0 MB
Uyarı: Uzak flathub'ten runtime/io.github.dvlv.boxbuddyrs.Locale/x86_64/stable çekerken: No such metadata object 17d6caf051cf468f9059 1. [✗] io.github.dvlv.boxbuddyrs.Locale                  stable            u             flathub            < 91,8 kB (kısmi) 2. [✓] org.freedesktop.LinuxAudio.Plugins.swh            23.08             i             flathub               7,1 MB / 7,7 MB 3. [✗] org.gnome.Platform.Locale                         45                u             flathub           < 380,5 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                         46                u             flathub           < 379,0 MB (kısmi) 5. [✗] org.gnome.Platform.Locale                         47                u             flathub           < 386,3 MB (kısmi) 6. [✗] org.gnome.Platform                                47                u             flathub           < 383,6 MB 7. [✗] io.github.dvlv.boxbuddyrs                         stable            u             flathub           < 760,3 kB 8. [✗] org.gnome.Platform                                46                u             flathub           < 363,2 MB 9. [✗] org.gnome.Platform                                45                u             flathub           < 382,2 MB10. [✗] com.brave.Browser                                 stable            u             flathub           < 178,5 MB11. [✗] org.kde.Platform.Locale                           6.6               u             flathub           < 392,4 MB (kısmi)12. [✗] org.kde.Platform                                  6.6               u             flathub           < 334,4 MB13. [✗] org.shotcut.Shotcut                               stable            u             flathub           < 113,0 MBUyarı: Uzak flathub'ten runtime/io.github.dvlv.boxbuddyrs.Locale/x86_64/stable çekerken: No such metadata object 17d6caf051cf468f9059b880280476a87172a3a3f1d5f74a5197f4a708305249.commit
Uyarı: Uzak flathub'ten runtime/org.gnome.Platform.Locale/x86_64/45 çekerken: No such metadata object d5e514a798bdb145fe53c29d661b2d6ef67dd0eadc85d3209caecb2c08c123a1.commit
Uyarı: Uzak flathub'ten runtime/org.gnome.Platform.Locale/x86_64/46 çekerken: No such metadata object ea0b2dc8558f5c7532c3e09482832f9f7211a60696b482b468bcf56ba8c4a906.commit
Uyarı: Uzak flathub'ten runtime/org.gnome.Platform.Locale/x86_64/47 çekerken: No such metadata object 5b3541e62eff57914feffb327e10012ba3777682ac80979b1288a6c60215365b.commit
Hata: Uzak flathub'ten runtime/org.gnome.Platform/x86_64/47 çekerken: No such metadata object d0713d7de6307db2dc27087a7d46fc4eabdda0e5ea637efd66e1282a9fa0088c.commit
Hata: Uzak flathub'ten app/io.github.dvlv.boxbuddyrs/x86_64/stable çekerken: No such metadata object 6db9f073e91ead4dbadf91f91ca06ec22cea5adfa7e8537af5530c6b7beb3bba.commit
Hata: Uzak flathub'ten runtime/org.gnome.Platform/x86_64/46 çekerken: No such metadata object 7baeb8503e6a4493e25190a66ad955088789a5d3dd0b99c3a3a972089e5eba68.commit
Hata: Uzak flathub'ten runtime/org.gnome.Platform/x86_64/45 çekerken: No such metadata object 541bff0c2aa0dd74f25fae558ec8ae2f5c58ea37e7a6579bf0d06f01f5a3898a.commit
Hata: Uzak flathub'ten app/com.brave.Browser/x86_64/stable çekerken: No such metadata object 28eee4aec672592b286dde451b3bdbb3604baf5b691ffe6db2c37072cdce67ba.commit
Uyarı: Uzak flathub'ten runtime/org.kde.Platform.Locale/x86_64/6.6 çekerken: No such metadata object 83f1c5b4e978f3f5c80c0cf80e712464ec1ed3855647d7b132a8bf279d2aebc0.commit
Hata: Uzak flathub'ten runtime/org.kde.Platform/x86_64/6.6 çekerken: No such metadata object 6e6e01960275a437ff2b25aaa019c6057f17517b5f4d7df954f719a2cffcd94f.commit
Hata: Uzak flathub'ten app/org.shotcut.Shotcut/x86_64/stable çekerken: No such metadata object 9e633ef83b0482cc72e358190d43a5059048b5b06751ba1d67f2507917195c35.commit
Değişiklikler tamamlandı.
hata: Bir veya daha fazla hata oluştu

They are included in the list to be updated. But if you look at the 1st and 2nd picture, you will see that they are not actually going to be updated, they don’t have an update definition.



The 3rd, 4th and 5th pictures show situations happening in sequence. In the 3rd picture I click on update all. In the 4th picture there is a screen showing that the update is complete and the list is refreshed. In the 5th picture you can see that the same packages are included in the update list again.


repos with update error:

gnome-software also doesn’t list fedora 41 main repo packages that need to be updated.


I closed the flathub repo. tried again. result:

% flatpak update
Güncellemeler aranıyor…

Bilgi: Çalışma ortamı org.kde.Platform, dal 6.6, ömrünün sonuna geldi, şu sebeple:
   We strongly recommend moving to the latest stable version of the Platform and SDK
Bilgi: Çalışma ortamını kullanan uygulamalar:
   br.eng.silas.qpdftools

Bilgi: Çalışma ortamı org.gnome.Platform, dal 45, ömrünün sonuna geldi, şu sebeple:
   The GNOME 45 runtime is no longer supported as of September 18, 2024. Please ask your application developer to migrate to a supported platform.
Bilgi: Çalışma ortamını kullanan uygulamalar:
   de.manuel_kehl.go-for-it


        KİMLİK                                     Dal              İş           Uzak              İndir
 1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi)
 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi)
 1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Local 1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi)
 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi)
 1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47            1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47               u            flathub           < 383,6 MB
 6. [✗] io.github.dvlv.boxbuddyrs                  stable           u            flathub           < 760,3 kB
 1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47               u            flathub           < 383,6 MB 6. [✗] io.github.dvlv.boxbuddyrs                  stable           u            flathub 1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47               u            flathub           < 383,6 MB 6. [✗] io.github.dvlv.boxbuddyrs                  stable           u            flathub           < 760,3 kB 7. [✗] org.gnome.Platform                         46               u            flathub           < 363,2 MB
 8. [✗] org.gnome.Platform                         45               u            flathub           < 382,2 MB
 1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47               u            flathub           < 383,6 MB 6. [✗] io.github.dvlv.boxbuddyrs                  stable           u            flathub           < 760,3 kB 7. [✗] org.gnome.Platform                         46               u            flathub           < 363,2 MB 8. [✗] org.gnome.Platform                         45               u            flathub           < 382,2 MB 9. [✗] com.brave.Browser   1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47               u            flathub           < 383,6 MB 6. [✗] io.github.dvlv.boxbuddyrs                  stable           u            flathub           < 760,3 kB 7. [✗] org.gnome.Platform                         46               u            flathub           < 363,2 MB 8. [✗] org.gnome.Platform                         45               u            flathub           < 382,2 MB 9. [✗] com.brave.Browser                          stable           u            flathub           < 178,5 MB
10. [✗] org.kde.Platform.Locale                    6.6              u            flathub           < 392,4 MB (kısmi)
 1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47               u            flathub           < 383,6 MB 6. [✗] io.github.dvlv.boxbuddyrs                  stable           u            flathub           < 760,3 kB 7. [✗] org.gnome.Platform                         46               u            flathub           < 363,2 MB 8. [✗] org.gnome.Platform                         45               u            flathub           < 382,2 MB 9. [✗] com.brave.Browser                          stable           u            flathub           < 178,5 MB10. [✗] org.kde.Platform.Locale                    6.6              u            flathub           < 392,4 MB (kısmi)11. [|] org.kde.Platform                           6.6              1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47               u            flathub           < 383,6 MB 6. [✗] io.github.dvlv.boxbuddyrs                  stable           u            flathub           < 760,3 kB 7. [✗] org.gnome.Platform                         46               u            flathub           < 363,2 MB 8. [✗] org.gnome.Platform                         45               u            flathub           < 382,2 MB 9. [✗] com.brave.Browser                          stable           u            flathub           < 178,5 MB10. [✗] org.kde.Platform.Locale                    6.6              u            flathub           < 392,4 MB (kısmi)11. [✗] org.kde.Platform                           6.6              u            flathub           < 334,4 MB
12. [ ] org.shotcut.Shotcut                        stable           u            flathub           < 113,0 MB
 1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47               u            flathub           < 383,6 MB 6. [✗] io.github.dvlv.boxbuddyrs                  stable           u            flathub           < 760,3 kB 7. [✗] org.gnome.Platform                         46               u            flathub           < 363,2 MB 8. [✗] org.gnome.Platform                         45               u            flathub           < 382,2 MB 9. [✗] com.brave.Browser                          stable           u            flathub           < 178,5 MB10. [✗] org.kde.Platform.Locale                    6.6              u            flathub           < 392,4 MB (kısmi)11. [✗] org.kde.Platform                           6.6              u            flathub           < 334,4 MB12. [|] org.shotcut.Shotcut                        stable           u            flathub    1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47               u            flathub           < 383,6 MB 6. [✗] io.github.dvlv.boxbuddyrs                  stable           u            flathub           < 760,3 kB 7. [✗] org.gnome.Platform                         46               u            flathub           < 363,2 MB 8. [✗] org.gnome.Platform                         45               u            flathub           < 382,2 MB 9. [✗] com.brave.Browser                          stable           u            flathub           < 178,5 MB10. [✗] org.kde.Platform.Locale                    6.6              u            flathub           < 392,4 MB (kısmi)11. [✗] org.kde.Platform                           6.6              u            flathub           < 334,4 MB12. [✗] org.shotcut.Shotcut                        stable           u            flathub           < 113,0 MB
Uyarı: Uzak flathub'ten runtime/io.github.dvlv.boxbuddyrs.Locale/x86_64/stable çekerken: No such metadata object 17d6caf051cf468f9059 1. [✗] io.github.dvlv.boxbuddyrs.Locale           stable           u            flathub            < 91,8 kB (kısmi) 2. [✗] org.gnome.Platform.Locale                  45               u            flathub           < 380,5 MB (kısmi) 3. [✗] org.gnome.Platform.Locale                  46               u            flathub           < 379,0 MB (kısmi) 4. [✗] org.gnome.Platform.Locale                  47               u            flathub           < 386,3 MB (kısmi) 5. [✗] org.gnome.Platform                         47               u            flathub           < 383,6 MB 6. [✗] io.github.dvlv.boxbuddyrs                  stable           u            flathub           < 760,3 kB 7. [✗] org.gnome.Platform                         46               u            flathub           < 363,2 MB 8. [✗] org.gnome.Platform                         45               u            flathub           < 382,2 MB 9. [✗] com.brave.Browser                          stable           u            flathub           < 178,5 MB10. [✗] org.kde.Platform.Locale                    6.6              u            flathub           < 392,4 MB (kısmi)11. [✗] org.kde.Platform                           6.6              u            flathub           < 334,4 MB12. [✗] org.shotcut.Shotcut                        stable           u            flathub           < 113,0 MBUyarı: Uzak flathub'ten runtime/io.github.dvlv.boxbuddyrs.Locale/x86_64/stable çekerken: No such metadata object 17d6caf051cf468f9059b880280476a87172a3a3f1d5f74a5197f4a708305249.commit
Uyarı: Uzak flathub'ten runtime/org.gnome.Platform.Locale/x86_64/45 çekerken: No such metadata object d5e514a798bdb145fe53c29d661b2d6ef67dd0eadc85d3209caecb2c08c123a1.commit
Uyarı: Uzak flathub'ten runtime/org.gnome.Platform.Locale/x86_64/46 çekerken: No such metadata object ea0b2dc8558f5c7532c3e09482832f9f7211a60696b482b468bcf56ba8c4a906.commit
Uyarı: Uzak flathub'ten runtime/org.gnome.Platform.Locale/x86_64/47 çekerken: No such metadata object 5b3541e62eff57914feffb327e10012ba3777682ac80979b1288a6c60215365b.commit
Hata: Uzak flathub'ten runtime/org.gnome.Platform/x86_64/47 çekerken: No such metadata object d0713d7de6307db2dc27087a7d46fc4eabdda0e5ea637efd66e1282a9fa0088c.commit
Hata: Uzak flathub'ten app/io.github.dvlv.boxbuddyrs/x86_64/stable çekerken: No such metadata object 6db9f073e91ead4dbadf91f91ca06ec22cea5adfa7e8537af5530c6b7beb3bba.commit
Hata: Uzak flathub'ten runtime/org.gnome.Platform/x86_64/46 çekerken: No such metadata object 7baeb8503e6a4493e25190a66ad955088789a5d3dd0b99c3a3a972089e5eba68.commit
Hata: Uzak flathub'ten runtime/org.gnome.Platform/x86_64/45 çekerken: No such metadata object 541bff0c2aa0dd74f25fae558ec8ae2f5c58ea37e7a6579bf0d06f01f5a3898a.commit
Hata: Uzak flathub'ten app/com.brave.Browser/x86_64/stable çekerken: No such metadata object 28eee4aec672592b286dde451b3bdbb3604baf5b691ffe6db2c37072cdce67ba.commit
Uyarı: Uzak flathub'ten runtime/org.kde.Platform.Locale/x86_64/6.6 çekerken: No such metadata object 83f1c5b4e978f3f5c80c0cf80e712464ec1ed3855647d7b132a8bf279d2aebc0.commit
Hata: Uzak flathub'ten runtime/org.kde.Platform/x86_64/6.6 çekerken: No such metadata object 6e6e01960275a437ff2b25aaa019c6057f17517b5f4d7df954f719a2cffcd94f.commit
Hata: Uzak flathub'ten app/org.shotcut.Shotcut/x86_64/stable çekerken: No such metadata object 9e633ef83b0482cc72e358190d43a5059048b5b06751ba1d67f2507917195c35.commit
Güncellemeler tamamlandı.
hata: Bir veya daha fazla hata oluştu

It might be that the two issues (flatpaks and RPMs from non-fedora repos not updating) are not related, given that RPMs from the fedora repos are working, if I understand correctly.

In order to troubleshoot the Flatpak issue, could you provide the output of the following commands:

  • head -3 /etc/os-release
  • flatpak remotes --show-disabled --columns=name,title,url,options
  • flatpak list.

Regarding the Brave browser, does updating with dnf work, i.e. by running sudo dnf upgrade brave-browser --refresh?

After re-enabling the flatpak repos (fedora, flathub), you could also try reinstalling invalid objects with sudo flatpak repair. Before running the command, you can check its man page to see what it is actually performing (man flatpak repair).

gnome-software cannot check the fedora rpm repository either.

sorry. my brother deleted the brave browser rpm package and installed the brave browser flatpak package instead.

The problem with gnome-software listing the wrong packages as to be updated applies to fedora’s flatpak repo.
gnome-software rpm not listing package updates for all rpm repos. including fedora rpm repo.

I upgraded from fedora 40 to fedora 41 using gnome-software at fedora’s suggestion. Could this be the cause of my problems? I wish I had done the upgrade with sudo dnf upgrade command.

Given the diversity of configurations and of hardware components, issues after upgrade can have several root causes.

Fixing the issue with the No such metadata object errors when running flatpak update could solve other issues too. This would be the order of terminal commands:

  • reenable the fedora remote: flatpak remote-modify --enable fedora
  • run the repair command: sudo flatpak repair
  • verify if updates are going through: flatpak update.
macellan@fedora:~$  flatpak update
Güncellemeler aranıyor…

Bilgi: (Sabitlenmiş) çalışma ortamı org.kde.Platform, dal 6.6, ömrünün sonuna geldi, şu sebeple:
   We strongly recommend moving to the latest stable version of the Platform and SDK
Bilgi: Çalışma ortamını kullanan uygulamalar:
   br.eng.silas.qpdftools

Bilgi: (Sabitlenmiş) çalışma ortamı org.gnome.Platform, dal 45, ömrünün sonuna geldi, şu sebeple:
   The GNOME 45 runtime is no longer supported as of September 18, 2024. Please ask your application developer to migrate to a supported platform.

Yapacak bir şey yok.

translated:

macellan@fedora:~$  flatpak update
Looking for updates…

Info: (Pinned) runtime org.kde.Platform, branch 6.6, is end-of-life due to:
   We strongly recommend moving to the latest stable version of the Platform and SDK
Information: Applications using the runtime environment:
   br.eng.silas.qpdftools

Info: (Pinned) runtime org.gnome.Platform, branch 45, is end-of-life due to:
   The GNOME 45 runtime is no longer supported as of September 18, 2024. Please ask your application developer to migrate to a supported platform.

There's nothing can be done.

gnome-software was nice today. All I did was:

sudo flatpak repair

to run the command.

gnome-software fixed it. But the update and check commands with terminal command show that there is nothing to update this time:

sudo dnf update
sudo dnf5 update
sudo dnf check-update
sudo dnf5 check-update


Happy to hear you fixed at least part of the issues.

Regarding nothing to update, it seems that your main fedora repository is disabled. This can be noticed in the screenshot with the sudo dnf check-update command.

EDIT: the above info might be wrong. Better to run sudo dnf upgrade --refresh to see all the repos updated and update packages at the same time.

Thank you for your answers. But it seems as if you created the title. Because the content of the topic I created was hidden after your complaint, I was asked to change it, I changed it, but it is still not published. Could you please fix this