I’ve got the same issue.
There is no history for me on the fedora net.thunderbird.Thunderbird flatpak app:
$ LANG=C flatpak remote-info fedora --log net.thunderbird.Thunderbird
Thunderbird - Thunderbird is a free and open source email, newsfeed, chat, and
calendaring client
ID: net.thunderbird.Thunderbird
Ref: app/net.thunderbird.Thunderbird/x86_64/stable
Arch: x86_64
Branch: stable
License: MPL-2.0
Collection:
Download: 155.6?MB
Installed: 340.8?MB
Runtime: org.fedoraproject.Platform/x86_64/f43
Sdk: org.fedoraproject.Sdk/x86_64/f43
Commit: 936d9f60ac420057270d5c0c26b3383b04177b678afd6f6e7b7b59df3f0e6663
Subject: Export net.thunderbird.Thunderbird
Date: 2025-10-12 19:21:33 +0000
History:
I converted back to the flathub thunderbird.
flatpak install flathub org.mozilla.Thunderbird.
after a first start i’ve moved the settings:
mv ~/.var/app/net.thunderbird.Thunderbird/.thunderbird ~/.var/app/org.mozilla.Thunderbird/