Gnome Issue after Update to Fedora 40

After upgrading from Fedora 39 to Fedora 40, the text in the menus does not appear. The text only appears when you hover over it.

Is there a workaround for this problem?

Add images

Hi there, welcome to the community!

Have you customised it in anyway? Different theme, icons?

The first step would be to see if the issues persist in a new user. If they don’t, then something in the user config is off, but if they do, it’s a system package issue.

Also of course: did the upgrade go through without errors?

I use the standard icons. Everything is standard. The error exists even if I create a new error. In which log should I check the installation. I did not notice any errors during the installation.

1 Like

OK, so it’s a system issue then. Let’s start by looking at the logs when you see the issue. That’ll hopefully help us what’s going on:

I didn’t find anything regarding fonts.

It doesn’t have to be font related though. Could you please paste your logs for folks to see? (Or upload them somewhere if they’re too large to upload?)

Mai 06 22:38:12 workstation gnome-keyring-daemon[4848]: asked to register item /org/freedesktop/secrets/collection/login/73, but it's already registered
Mai 06 22:40:02 workstation systemd[1]: Starting sysstat-collect.service - system activity accounting tool...
Mai 06 22:40:02 workstation systemd[1]: sysstat-collect.service: Deactivated successfully.
Mai 06 22:40:02 workstation systemd[1]: Finished sysstat-collect.service - system activity accounting tool.
Mai 06 22:40:02 workstation audit[1]: SERVICE_START pid=1 uid=0 auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0 msg='unit=sysstat-collect comm="systemd" exe="/usr/lib/systemd/systemd" hostname=? addr=? terminal=? res=success'
Mai 06 22:40:02 workstation audit[1]: SERVICE_STOP pid=1 uid=0 auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0 msg='unit=sysstat-collect comm="systemd" exe="/usr/lib/systemd/systemd" hostname=? addr=? terminal=? res=success'
Mai 06 22:41:36 workstation gnome-shell[5138]: Received error from D-Bus search provider org.gnome.Boxes.desktop: Gio.IOErrorEnum: Cannot invoke method; proxy is for the well-known name org.gnome.Boxes.SearchProvider without an owner, and proxy was constructed with the G_DBUS_PROXY_FLAGS_DO_NOT_AUTO_START flag
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-com.github.hugolabe.Wike.SearchProvider@3.service.
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-de.haeckerfelix.gradio@4.service.
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-org.gnome.Calculator.SearchProvider@3.service.
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-org.gnome.Characters@3.service.
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-org.gnome.Contacts.SearchProvider@3.service.
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-org.gnome.Epiphany.SearchProvider@2.service.
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-org.gnome.Nautilus@4.service.
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-org.gnome.Photos@14.service.
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-org.gnome.Settings.SearchProvider@3.service.
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-org.gnome.clocks@3.service.
Mai 06 22:41:36 workstation systemd[4796]: Started dbus-:1.2-org.mozilla.firefox.SearchProvider@20.service.
Mai 06 22:41:36 workstation systemd[4796]: dbus-:1.2-org.mozilla.firefox.SearchProvider@20.service: Main process exited, code=exited, status=1/FAILURE
Mai 06 22:41:36 workstation systemd[4796]: dbus-:1.2-org.mozilla.firefox.SearchProvider@20.service: Failed with result 'exit-code'.
Mai 06 22:41:36 workstation gnome-shell[5138]: Received error from D-Bus search provider org.mozilla.firefox.desktop: Gio.DBusError: GDBus.Error:org.freedesktop.DBus.Error.NameHasNoOwner: Could not activate remote peer 'org.mozilla.firefox.SearchProvider': unit failed
Mai 06 22:41:36 workstation gradio[29527]: gradio-app.vala:185: Gradio 7.3 
Mai 06 22:41:36 workstation gradio[29527]: gradio-app.vala:193: Locale dir: /usr/share/locale
Mai 06 22:41:37 workstation nautilus[29532]: Connecting to org.freedesktop.Tracker3.Miner.Files
Mai 06 22:41:37 workstation wike-sp[29526]: /usr/share/wike/wike/wikipedia.py:8: PyGIWarning: Soup was imported without specifying a version first. Use gi.require_version('Soup', '3.0') before import to ensure that the right version gets loaded.
Mai 06 22:41:37 workstation wike-sp[29526]:   from gi.repository import Soup
Mai 06 22:41:37 workstation gradio[29527]: gradio-app.vala:135: Registered search provider service.
Mai 06 22:41:37 workstation gnome-shell[5138]: Received error from D-Bus search provider org.gnome.Boxes.desktop: Gio.IOErrorEnum: Cannot invoke method; proxy is for the well-known name org.gnome.Boxes.SearchProvider without an owner, and proxy was constructed with the G_DBUS_PROXY_FLAGS_DO_NOT_AUTO_START flag
Mai 06 22:41:37 workstation systemd[4796]: Started dbus-:1.2-org.mozilla.firefox.SearchProvider@21.service.
Mai 06 22:41:37 workstation gradio[29527]: gradio-library.vala:75: Open database...
Mai 06 22:41:37 workstation gradio[29527]: gradio-library.vala:76: /home/baba/.local/share/gradio/gradio.db
Mai 06 22:41:37 workstation gradio[29527]: gradio-library.vala:46: Successfully opened database! Reading database data...
Mai 06 22:41:37 workstation systemd[4796]: dbus-:1.2-org.mozilla.firefox.SearchProvider@21.service: Main process exited, code=exited, status=1/FAILURE
Mai 06 22:41:37 workstation systemd[4796]: dbus-:1.2-org.mozilla.firefox.SearchProvider@21.service: Failed with result 'exit-code'.
Mai 06 22:41:37 workstation gradio[29527]: gradio-search-provider.vala:51: Searching for "ca"
Mai 06 22:41:37 workstation gradio[29527]: gradio-search-provider.vala:51: Searching for "cal"
Mai 06 22:41:37 workstation gnome-shell[5138]: Received error from D-Bus search provider org.mozilla.firefox.desktop: Gio.DBusError: GDBus.Error:org.freedesktop.DBus.Error.NameHasNoOwner: Could not activate remote peer 'org.mozilla.firefox.SearchProvider': unit failed
Mai 06 22:41:37 workstation gnome-shell[5138]: Received error from D-Bus search provider org.gnome.Boxes.desktop: Gio.IOErrorEnum: Cannot invoke method; proxy is for the well-known name org.gnome.Boxes.SearchProvider without an owner, and proxy was constructed with the G_DBUS_PROXY_FLAGS_DO_NOT_AUTO_START flag
Mai 06 22:41:37 workstation systemd[4796]: Started dbus-:1.2-org.mozilla.firefox.SearchProvider@22.service.
Mai 06 22:41:37 workstation systemd[4796]: dbus-:1.2-org.mozilla.firefox.SearchProvider@22.service: Main process exited, code=exited, status=1/FAILURE
Mai 06 22:41:37 workstation systemd[4796]: dbus-:1.2-org.mozilla.firefox.SearchProvider@22.service: Failed with result 'exit-code'.
Mai 06 22:41:37 workstation gnome-shell[5138]: Received error from D-Bus search provider org.mozilla.firefox.desktop: Gio.DBusError: GDBus.Error:org.freedesktop.DBus.Error.NameHasNoOwner: Could not activate remote peer 'org.mozilla.firefox.SearchProvider': unit failed
Mai 06 22:41:37 workstation gnome-character[29529]: JS LOG: Characters Application started
Mai 06 22:41:37 workstation gradio[29527]: gradio-search-provider.vala:51: Searching for "calc"
Mai 06 22:41:37 workstation gradio[29527]: gradio-station-provider.vala:73: Aborted parsing search results! <data>:1:11: Parse error: unexpected identifier `Redirecting', expected value
Mai 06 22:41:37 workstation gradio[29527]: gradio-station-provider.vala:73: Aborted parsing search results! <data>:1:11: Parse error: unexpected identifier `Redirecting', expected value
Mai 06 22:41:37 workstation systemd[4796]: Started dbus-:1.2-org.gnome.NautilusPreviewer@4.service.
Mai 06 22:41:37 workstation gradio[29527]: gradio-station-provider.vala:73: Aborted parsing search results! <data>:1:11: Parse error: unexpected identifier `Redirecting', expected value
Mai 06 22:41:37 workstation systemd[4796]: Started dbus-:1.2-com.intel.dleyna\x2drenderer@13.service.
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: dLeyna core version 0.8.3
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: dleyna-renderer-service version 0.8.3
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Type[0] Level[0x13] Mask[0x4C] Flags[0x4F]
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Load file [/home/baba/.config/dleyna-renderer-service.conf]
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: [General settings]
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Never Quit: F
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Connector Name: dbus
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Port: 0
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Push host port: 0
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: [Logging settings]
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Log Type : 0
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Log Level: 0x13
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: [Network filtering settings]
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Enabled : F
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Entries: (null)
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Calling GetRenderers method
Mai 06 22:41:37 workstation dleyna-renderer-service[29720]: Client :1.366 lost
Mai 06 22:41:38 workstation dleyna-renderer-service[29720]: dLeyna: Exit
Mai 06 22:41:39 workstation systemd[4796]: Started app-gnome-org.gnome.Calculator-29743.scope - Application launched by gnome-shell.
Mai 06 22:41:40 workstation gnome-shell[5138]: Window manager warning: Buggy client sent a _NET_ACTIVE_WINDOW message with a timestamp of 0 for 0x4c00004
Mai 06 22:41:47 workstation gradio[29527]: gradio-app.vala:146: Unregistered search provider service.
Mai 06 22:41:47 workstation gnome-character[29529]: JS LOG: Characters Application exiting
Mai 06 22:41:49 workstation systemd[4796]: dbus-:1.2-org.gnome.Contacts.SearchProvider@3.service: Consumed 1.609s CPU time.
Mai 06 22:42:37 workstation systemd[4796]: dbus-:1.2-org.gnome.Epiphany.SearchProvider@2.service: Unit process 29638 (WebKitNetworkPr) remains running after unit stopped.

After install of f40 i used the command “dnf autoremove”.

can you edit the post, highlight the paste and click on the </> preformatted text so we can see it better ?

1 Like

The log file is 625 MB with 3876272 line. It is too big. I think will reduce it to a few hours after a reboot.

I was asking for you to edit your previous post.

But let’s ignore that and just go ahead and do a dnf distro-sync maybe this will fix the issue. Please reboot afterwards as well.

1 Like

I apologize, I will format my previous post accordingly.

i had already executed the command “dnf distro-sync” after installing f40. Later again.

Hrm, can you check your dnf history to see what this removed?

sudo dnf history list

If you’re using Fedora Workstation (Gnome), try this to make sure all the necessary packages are installed:

sudo dnf groupinstall "Fedora Workstation"

If you can post the output for us to see, that’ll also be very useful.

All I can think of at the moment is that some fonts/font configs are missing. So hopefully reinstalling the group should fix that.

I grep in the log and find something with gnome-character

Mai 06 23:05:32 workstation systemd[4796]: Started dbus-:1.2-org.gnome.Characters@5.service.
Mai 06 23:05:33 workstation gnome-character[30883]: JS LOG: Characters Application started
Mai 06 23:05:43 workstation gnome-character[30883]: JS LOG: Characters Application exiting

I have looked in the history. This files was deleted after installation.

# dnf history info 1074
Transaction ID : 1074
Begin time     : Do 02 Mai 2024 20:35:03 CEST
Begin rpmdb    : daff6e7ddfd6aad3212e5168f1ffd0bfa9cf9042faebb35aff430af0ef882ccd
End time       : Do 02 Mai 2024 20:35:11 CEST (8 seconds)
End rpmdb      : 47e9932085b280ba06bf50fb11e324c4d3d62020799763b5f2569dc09bcc1461
User           : Mete <baba>
Return-Code    : Success
Releasever     : 40
Command Line   : autoremove
Comment        : 
Packages Altered:
    Removed IPAddress-5.2.1-17.fc40.noarch                   @@System
    Removed adwaita-qt6-1.4.2-7.fc40.x86_64                  @@System
    Removed clang16-libs-16.0.6-5.fc40.x86_64                @@System
    Removed clang16-resource-filesystem-16.0.6-5.fc40.x86_64 @@System
    Removed composefs-1.0.3-1.fc40.x86_64                    @@System
    Removed composefs-libs-1.0.3-1.fc40.x86_64               @@System
    Removed dbus-glib-devel-0.112-8.fc40.x86_64              @@System
    Removed dotconf-1.3-35.fc40.x86_64                       @@System
    Removed f38-backgrounds-base-38.1.1-2.fc39.noarch        @@System
    Removed f38-backgrounds-gnome-38.1.1-2.fc39.noarch       @@System
    Removed f39-backgrounds-base-39.0.5-3.fc40.noarch        @@System
    Removed f39-backgrounds-gnome-39.0.5-3.fc40.noarch       @@System
    Removed fontawesome-fonts-web-1:6.5.2-1.fc40.noarch      @@System
    Removed fontawesome4-fonts-1:4.7.0-22.fc40.noarch        @@System
    Removed fontawesome4-fonts-web-1:4.7.0-22.fc40.noarch    @@System
    Removed gnome-shell-extension-gamemode-8-7.fc40.noarch   @@System
    Removed guile22-2.2.7-11.fc40.x86_64                     @@System
    Removed highway-1.1.0-1.fc40.i686                        @@System
    Removed iptables-utils-1.8.10-7.fc40.x86_64              @@System
    Removed java-11-openjdk-1:11.0.22.0.7-2.fc40.1.x86_64    @@System
    Removed js-jquery-3.7.1-3.fc40.noarch                    @@System
    Removed libadwaita-qt6-1.4.2-7.fc40.x86_64               @@System
    Removed libconfig-1.7.3-8.fc40.i686                      @@System
    Removed libdbusmenu-16.04.0-27.fc40.i686                 @@System
    Removed libdbusmenu-gtk3-16.04.0-27.fc40.i686            @@System
    Removed libdc1394-2.2.7-5.fc40.x86_64                    @@System
    Removed libffado-2.4.8-1.fc40.x86_64                     @@System
    Removed libffado-2.4.8-1.fc40.i686                       @@System
    Removed libgcab1-1.6-5.fc40.x86_64                       @@System
    Removed libgit2_1.6-1.6.5-1.fc40.x86_64                  @@System
    Removed libgnomekbd-3.28.1-5.fc40.x86_64                 @@System
    Removed libicu72-72.1-2.fc39.x86_64                      @@System
    Removed libicu73-73.2-1.fc40.x86_64                      @@System
    Removed libiec61883-1.2.0-34.fc40.i686                   @@System
    Removed libiodbc-3.52.15-4.fc39.x86_64                   @@System
    Removed libjxl-1:0.8.2-6.fc40.i686                       @@System
    Removed libliftoff-0.4.1-4.fc40.x86_64                   @@System
    Removed libmetalink-0.1.3-34.fc40.x86_64                 @@System
    Removed libmysofa-1.2.1-7.fc40.i686                      @@System
    Removed libpeas-2.0.2-1.fc40.x86_64                      @@System
    Removed libpmemobj-2.0.1-3.fc40.x86_64                   @@System
    Removed libpng12-1.2.57-20.fc40.x86_64                   @@System
    Removed libpng12-1.2.57-20.fc40.i686                     @@System
    Removed libraw1394-2.1.2-20.fc40.i686                    @@System
    Removed libseat-0.8.0-2.fc40.x86_64                      @@System
    Removed libsigsegv-2.14-8.fc40.x86_64                    @@System
    Removed libunistring1.0-1.0-4.fc40.x86_64                @@System
    Removed libunistring1.0-1.0-4.fc40.i686                  @@System
    Removed libvpx8-1.13.1-1.fc40.x86_64                     @@System
    Removed libxcrypt-compat-4.4.36-5.fc40.i686              @@System
    Removed libxklavier-5.4-25.fc40.x86_64                   @@System
    Removed libxml++-2.42.3-3.fc40.i686                      @@System
    Removed lilv-libs-0.24.20-3.fc40.i686                    @@System
    Removed llvm16-libs-16.0.6-7.fc40.x86_64                 @@System
    Removed mozjs102-102.15.1-5.fc40.x86_64                  @@System
    Removed openfec-1.4.2.6-4.fc40.x86_64                    @@System
    Removed openfec-1.4.2.6-4.fc40.i686                      @@System
    Removed openssl-pkcs11-0.4.12-8.fc40.i686                @@System
    Removed ostree-2024.5-1.fc40.x86_64                      @@System
    Removed perl-Importer-0.026-12.fc40.noarch               @@System
    Removed perl-JSON-XS-1:4.03-13.fc40.x86_64               @@System
    Removed perl-Types-Serialiser-1.01-11.fc40.noarch        @@System
    Removed perl-common-sense-3.7.5-17.fc40.x86_64           @@System
    Removed poco-debug-1.12.4-6.fc40.x86_64                  @@System
    Removed pygobject2-2.28.7-21.fc40.x86_64                 @@System
    Removed pygtk2-2.24.0-43.fc40.x86_64                     @@System
    Removed python-systemd-doc-235-9.fc40.x86_64             @@System
    Removed python2-cairo-1.18.2-16.fc40.x86_64              @@System
    Removed python3-backcall-0.1.0-22.fc40.noarch            @@System
    Removed python3-cython-3.0.9-1.fc40.x86_64               @@System
    Removed python3-deprecation-2.1.0-12.fc40.noarch         @@System
    Removed python3-importlib-metadata-6.9.0-3.fc40.noarch   @@System
    Removed python3-kerberos-1.3.0-24.fc40.x86_64            @@System
    Removed python3-lazy-object-proxy-1.10.0-3.fc40.x86_64   @@System
    Removed python3-munkres-1.1.2-19.fc40.noarch             @@System
    Removed python3-nbclassic-0.5.6-5.fc40.noarch            @@System
    Removed python3-pickleshare-0.7.5-15.fc40.noarch         @@System
    Removed python3-pyrsistent-0.20.0-5.fc40.x86_64          @@System
    Removed python3-raven-6.10.0-20.fc40.noarch              @@System
    Removed python3-snappy-0.6.1-8.fc40.x86_64               @@System
    Removed python3-testpath-0.6.0-10.fc40.noarch            @@System
    Removed python3-typed_ast-1.5.5-2.fc39.x86_64            @@System
    Removed python3-xlwt-1.3.0-10.fc40.noarch                @@System
    Removed python3-zipp-3.17.0-3.fc40.noarch                @@System
    Removed qgnomeplatform-qt6-0.9.2-12.fc40.x86_64          @@System
    Removed rhino-1.7.14-10.fc40.noarch                      @@System
    Removed roc-toolkit-0.3.0-1.fc40.x86_64                  @@System
    Removed roc-toolkit-0.3.0-1.fc40.i686                    @@System
    Removed serd-0.30.16-3.fc40.i686                         @@System
    Removed slirp4netns-1.2.2-2.fc40.x86_64                  @@System
    Removed sord-0.16.14-3.fc40.i686                         @@System
    Removed speech-dispatcher-0.11.5-5.fc40.x86_64           @@System
    Removed speech-dispatcher-espeak-ng-0.11.5-5.fc40.x86_64 @@System
    Removed speexdsp-1.2.1-6.fc40.i686                       @@System
    Removed sratom-0.6.14-3.fc40.i686                        @@System
    Removed trousers-0.3.15-10.fc40.x86_64                   @@System
    Removed trousers-lib-0.3.15-10.fc40.x86_64               @@System
    Removed wayland-protocols-devel-1.34-1.fc40.noarch       @@System
    Removed web-assets-filesystem-5-21.fc40.noarch           @@System
    Removed wlroots-0.17.2-1.fc40.x86_64                     @@System
    Removed wlroots0.15-0.15.1-3.fc39.x86_64                 @@System
    Removed xcb-util-errors-1.0.1-3.fc40.x86_64              @@System
Scriptlet output:
   1 Removed "/etc/systemd/system/local-fs.target.wants/ostree-remount.service".
   2 Warning: The unit file, source configuration file or drop-ins of ostree-remount.service changed on disk. Run 'systemctl daemon-reload' to reload units.

After executing the Command

sudo dnf groupinstall “Fedora Workstation”

a large number of packages were installed. But this didn’t solve the problem.
I will try to install the erased package from the command

dnf autoremove

1 Like

Also after updates, problem still exist.

Any further ideas to solve my problem?

Here is an pic of how calc app look like, with this problem.

After I read the post from @grumpey

Can you check to see if,
GSK_RENDERER=gl gnome-control-center
Works.

On the discussion:

The rendering issue seems away

GSK_RENDERER=gl gnome-calculator 

2 Likes