Python conda package manager update

avatar-mod · April 16, 2024, 4:38pm

Problem

At this moment on Fedora 39 @System repository has conda package (package homepage) with the unactual 23.9.0 version. This version has bug in conda init^[1]^[2].

This bug was fixed in 24.3.0 release in pull-request^[3]. Fedora Rawhide has actual version.

Cause

Not yet known.

Solution

Update package in Fedora 39 @System repository to actual version.

github.com/conda/conda

Anaconda3 Command Line Install for MacOS 13.3.1: TypeError Bug

opened 10:29PM - 21 May 23 UTC

closed 09:47PM - 26 Feb 24 UTC

Rahul-Rut

type::bug source::community

### Checklist - [X] I added a descriptive title - [X] I searched open reports a…nd couldn't find a duplicate ### What happened? OS: MacOS 13.3.1 File: Anaconda3-2023.03-1-MacOSX-arm64 I had previously installed Anaconda, but had to uninstall it for various reasons, and now when I tried reinstall-ing it using the pkg file, I kept running into an error and failed to install it. Upon trying the Command Line Install, I ran into the following Error Report: `>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<< Traceback (most recent call last): File "/Users/USERNAME/anaconda3/lib/python3.10/site-packages/conda/exceptions.py", line 1132, in __call__ return func(*args, **kwargs) File "/Users/USERNAME/anaconda3/lib/python3.10/site-packages/conda/cli/main.py", line 69, in main_subshell exit_code = do_call(args, p) File "/Users/USERNAME/anaconda3/lib/python3.10/site-packages/conda/cli/conda_argparse.py", line 122, in do_call return getattr(module, func_name)(args, parser) File "/Users/USERNAME/anaconda3/lib/python3.10/site-packages/conda/cli/main_init.py", line 33, in execute return initialize(context.conda_prefix, selected_shells, for_user, args.system, File "/Users/USERNAME/anaconda3/lib/python3.10/site-packages/conda/core/initialize.py", line 113, in initialize run_plan_elevated(plan2) File "/Users/USERNAME/anaconda3/lib/python3.10/site-packages/conda/core/initialize.py", line 709, in run_plan_elevated result = subprocess_call( File "/Users/USERNAME/anaconda3/lib/python3.10/site-packages/conda/gateways/subprocess.py", line 98, in subprocess_call stdout, stderr = process.communicate(input=stdin) File "/Users/USERNAME/anaconda3/lib/python3.10/subprocess.py", line 1154, in communicate stdout, stderr = self._communicate(input, endtime, timeout) File "/Users/USERNAME/anaconda3/lib/python3.10/subprocess.py", line 1985, in _communicate input_view = memoryview(self._input) TypeError: memoryview: a bytes-like object is required, not 'str' ### Conda Info ```shell active environment : None user config file : /Users/USERNAME/.condarc populated config files : /Users/USERNAME/.condarc conda version : 23.3.1 conda-build version : 3.24.0 python version : 3.10.9.final.0 virtual packages : __archspec=1=arm64 __osx=13.3.1=0 __unix=0=0 base environment : /Users/USERNAME/anaconda3 (writable) conda av data dir : /Users/USERNAME/anaconda3/etc/conda conda av metadata url : None channel URLs : https://repo.anaconda.com/pkgs/main/osx-arm64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/osx-arm64 https://repo.anaconda.com/pkgs/r/noarch package cache : /Users/USERNAME/anaconda3/pkgs /Users/USERNAME/.conda/pkgs envs directories : /Users/USERNAME/anaconda3/envs /Users/USERNAME/.conda/envs platform : osx-arm64 user-agent : conda/23.3.1 requests/2.28.1 CPython/3.10.9 Darwin/22.4.0 OSX/13.3.1 UID:GID : 501:20 netrc file : None offline mode : False ``` ### Conda Config ```shell ==> /opt/homebrew/Caskroom/miniforge/base/.condarc <== channels: - conda-forge ==> /Users/USERNAME/.condarc <== channels: - defaults ``` ### Conda list ```shell # packages in environment at /opt/homebrew/Caskroom/miniforge/base: # # Name Version Build Channel brotlipy 0.7.0 py310h8e9501a_1005 conda-forge bzip2 1.0.8 h3422bc3_4 conda-forge ca-certificates 2022.12.7 h4653dfc_0 conda-forge certifi 2022.12.7 pyhd8ed1ab_0 conda-forge cffi 1.15.1 py310h2399d43_3 conda-forge charset-normalizer 3.1.0 pyhd8ed1ab_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge conda 23.1.0 py310hbe9552e_0 conda-forge conda-package-handling 2.0.2 pyh38be061_0 conda-forge conda-package-streaming 0.7.0 pyhd8ed1ab_1 conda-forge cryptography 40.0.1 py310hfc83b78_0 conda-forge idna 3.4 pyhd8ed1ab_0 conda-forge libcxx 16.0.0 h75e25f2_0 conda-forge libffi 3.4.2 h3422bc3_5 conda-forge libsqlite 3.40.0 h76d750c_0 conda-forge libzlib 1.2.13 h03a7124_4 conda-forge ncurses 6.3 h07bb92c_1 conda-forge openssl 3.1.0 h03a7124_0 conda-forge pip 23.0.1 pyhd8ed1ab_0 conda-forge pluggy 1.0.0 pyhd8ed1ab_5 conda-forge pycosat 0.6.4 py310h8e9501a_1 conda-forge pycparser 2.21 pyhd8ed1ab_0 conda-forge pyopenssl 23.1.1 pyhd8ed1ab_0 conda-forge pysocks 1.7.1 pyha2e5f31_6 conda-forge python 3.10.10 h3ba56d0_0_cpython conda-forge python_abi 3.10 3_cp310 conda-forge readline 8.2 h92ec313_1 conda-forge requests 2.28.2 pyhd8ed1ab_1 conda-forge ruamel.yaml 0.17.21 py310h8e9501a_3 conda-forge ruamel.yaml.clib 0.2.7 py310h8e9501a_1 conda-forge setuptools 65.6.3 pyhd8ed1ab_0 conda-forge tk 8.6.12 he1e0b03_0 conda-forge toolz 0.12.0 pyhd8ed1ab_0 conda-forge tqdm 4.65.0 pyhd8ed1ab_1 conda-forge tzdata 2023c h71feb2d_0 conda-forge urllib3 1.26.15 pyhd8ed1ab_0 conda-forge wheel 0.40.0 pyhd8ed1ab_0 conda-forge xz 5.2.6 h57fd34a_0 conda-forge zstandard 0.19.0 py310had9512b_1 conda-forge zstd 1.5.2 hf913c23_6 conda-forge ``` ### Additional Context The following were presented as environment variables: environment variables: CIO_TEST=<not set> CONDA_ROOT=/Users/USERNAME/anaconda3 CURL_CA_BUNDLE=<not set> INFOPATH=/opt/homebrew/share/info: LD_PRELOAD=<not set> MANPATH=/opt/homebrew/share/man:: PATH=/opt/anaconda3/bin:/Library/Frameworks/Python.framework/Versions/3.10/ bin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Crypte xes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/var /run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin: /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/v ar/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleint ernal/bin REQUESTS_CA_BUNDLE=<not set> SSL_CERT_FILE=<not set>

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there is also other issues reffered to this problem ↩︎
github.com/conda/conda

gateways.subprocess: fix subprocess_call when stdin is bytes

conda:main ← FFY00:fix-12713

opened 03:03AM - 26 Oct 23 UTC

FFY00

+73 -32

Fixes #11530, #12698, and #12713

↩︎

mattdm · April 16, 2024, 5:36pm

I’m not sure what you mean here, exactly. I just looked, and the package appears to have the proper, released 23.9.0 version from upstream.

avatar-mod · April 16, 2024, 5:44pm

The 23.9.0 version not contain bugfix because it was included in 24.3.0 which available in Fedora Rawhide only at current moment.

kparal · April 17, 2024, 7:37am

Hi @avatar-mod . I have a feeling that you want to ask conda maintainers to update the Fedora 39 version to fix the referenced bug? In that case, you need to go to bugzilla and file it there.

Common Issues is used to document highly visible and important bugs for most of our userbase, which this seems like it’s not. Switching categories.

kparal · April 17, 2024, 7:38am

From Proposed Common Issues to Ask Fedora

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Some of the packages showing previous version number on F39 Ask Fedora f39 , workstation	13	486	November 10, 2023
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Python conda package manager update

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