Problem upgrading from Fedora Silverblue 38 to 39

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1

This problem occurs and I don’t know how to fix it

❯ rpm-ostree update
note: automatic updates (stage) are enabled
Pulling manifest: ostree-image-signed:docker://ghcr.io/ublue-os/silverblue-nvidia:latest
Checking out tree e9c4768... done
Enabled rpm-md repositories: updates fedora rpmfusion-free-updates rpmfusion-free rpmfusion-nonfree-updates rpmfusion-nonfree google-chrome rpmfusion-nonfree-nvidia-driver rpmfusion-nonfree-steam phracek-PyCharm copr:copr.fedorainfracloud.org:champe20:apx
Importing rpm-md... done
rpm-md repo 'updates' (cached); generated: 2023-11-08T01:14:26Z solvables: 9928
rpm-md repo 'fedora' (cached); generated: 2023-11-03T02:50:25Z solvables: 70825
rpm-md repo 'rpmfusion-free-updates' (cached); generated: 2023-11-07T19:31:11Z solvables: 13
rpm-md repo 'rpmfusion-free' (cached); generated: 2023-11-04T16:49:08Z solvables: 445
rpm-md repo 'rpmfusion-nonfree-updates' (cached); generated: 2023-11-07T19:50:21Z solvables: 22
rpm-md repo 'rpmfusion-nonfree' (cached); generated: 2023-11-04T17:26:32Z solvables: 208
rpm-md repo 'google-chrome' (cached); generated: 2023-11-07T22:23:37Z solvables: 3
rpm-md repo 'rpmfusion-nonfree-nvidia-driver' (cached); generated: 2023-11-07T15:52:41Z solvables: 29
rpm-md repo 'rpmfusion-nonfree-steam' (cached); generated: 2023-08-10T16:27:35Z solvables: 2
rpm-md repo 'phracek-PyCharm' (cached); generated: 2023-08-10T15:35:19Z solvables: 5
rpm-md repo 'copr:copr.fedorainfracloud.org:champe20:apx' (cached); generated: 2023-10-24T12:06:39Z solvables: 4
Resolving dependencies... done
Checking out packages... done
error: Checkout binutils-2.40-13.fc39.x86_64: Hardlinking b0/5c0ba45128dbfb28a8089c44e19f93cd0e4531678f017696f69515b916f6c3.file to ld: File exists
2

This might be caused by one of your layered packages. I recommend you remove all your layered packages, reboot, and then try the rebase again. If it’s successful this time, you can start installing your previously layered packages again. The error message will reappear until you remove the problem package from the list.

I had the same issue as you; in my case the problem package was lib-guestfs-tools.

3

Thanks for your help, I’ll try to see if this solves it tomorrow

4

your tip solved it, thank you