Wrong solving of dependencies? As a result of conflicting repositories maybe? texlive-scheme-full certainly depends on git. I also see git-core removed in one of your outputs above.
I think pkcon get-transactions would be the command that would show the history of GNOME Software transactions, but it fails on my system with a core dump. Maybe it’s working on your’s?
coredumpctl list would present the history of core dumps, then coredumpctl info <pid> would give details of a specific process with id <pid>. Might not give the expected details though.
It’s obvious you’re using your system responsibly, which makes it more curious of what could have happened.
I also get a core dump with pkcon get-transactions unfortunately.
I found the gnome-font-viewer coredump and it’s the only one in February. Here’s the info:
dusanekm@biomech-fedora:~$ coredumpctl info 21933 --no-pager
PID: 21933 (gnome-font-view)
UID: 1000 (dusanekm)
GID: 1000 (dusanekm)
Signal: 11 (SEGV)
Timestamp: Fri 2025-02-07 09:38:32 CET (4 days ago)
Command Line: gnome-font-viewer
Executable: /app/bin/gnome-font-viewer
Control Group: /user.slice/user-1000.slice/user@1000.service/app.slice/app-flatpak-org.gnome.font\x2dviewer-2379.scope
Unit: user@1000.service
User Unit: app-flatpak-org.gnome.font\x2dviewer-2379.scope
Slice: user-1000.slice
Owner UID: 1000 (dusanekm)
Boot ID: 040019ebb46f468ea39da015f9eade5b
Machine ID: a9f0e3d0eb034188acce9dbf88d856b1
Hostname: biomech-fedora
Storage: /var/lib/systemd/coredump/core.gnome-font-view.1000.040019ebb46f468ea39da015f9eade5b.21933.1738917512000000.zst (present)
Size on Disk: 5.8M
Message: Process 21933 (gnome-font-view) of user 1000 dumped core.
Module /app/bin/gnome-font-viewer without build-id.
Module /app/bin/gnome-font-viewer
Module /usr/lib64/libvulkan_lvp.so from rpm mesa-24.3.2-2.fc41.x86_64
Module /usr/lib64/libvulkan_intel.so from rpm mesa-24.3.2-2.fc41.x86_64
Module /usr/lib64/libVkLayer_MESA_device_select.so from rpm mesa-24.3.2-2.fc41.x86_64
Module /usr/lib64/libGLdispatch.so.0.0.0 from rpm libglvnd-1.7.0-5.fc41.x86_64
Module /usr/lib64/libgbm.so.1.0.0 from rpm mesa-24.3.2-2.fc41.x86_64
Module /usr/lib64/libFcitx5GClient.so.5.1.3 from rpm fcitx5-gtk-5.1.3-2.fc41.x86_64
Module /usr/lib64/gtk-4.0/4.0.0/immodules/libim-fcitx5.so from rpm fcitx5-gtk-5.1.3-2.fc41.x86_64
Module /usr/lib64/libcrypt.so.2.0.0 from rpm libxcrypt-4.4.37-4.fc41.x86_64
Module /usr/lib64/libblkid.so.1.1.0 from rpm util-linux-2.40.2-4.fc41.x86_64
Module /usr/lib64/libmount.so.1.1.0 from rpm util-linux-2.40.2-4.fc41.x86_64
Module /usr/lib64/libz.so.1.3.1.zlib-ng from rpm zlib-ng-2.1.7-3.fc41.x86_64
Module /usr/lib64/libvulkan.so.1.3.296 without build-id.
Module /usr/lib64/libvulkan.so.1.3.296
Module libtinfo.so.6 from rpm ncurses-6.5-2.20240629.fc41.x86_64
Module libedit.so.0 from rpm libedit-3.1-54.20250104cvs.fc41.x86_64
Module libSPIRV-Tools.so from rpm spirv-tools-2024.4-1.fc41.x86_64
Module libxshmfence.so.1 from rpm libxshmfence-1.3.2-5.fc41.x86_64
Module libxcb-randr.so.0 from rpm libxcb-1.17.0-3.fc41.x86_64
Module libxcb-sync.so.1 from rpm libxcb-1.17.0-3.fc41.x86_64
Module libxcb-xfixes.so.0 from rpm libxcb-1.17.0-3.fc41.x86_64
Module libxcb-present.so.0 from rpm libxcb-1.17.0-3.fc41.x86_64
Module libxcb-dri3.so.0 from rpm libxcb-1.17.0-3.fc41.x86_64
Module librsvg-2.so.2 from rpm librsvg2-2.59.2-1.fc41.x86_64
Module libpixbufloader_svg.so from rpm librsvg2-2.59.2-1.fc41.x86_64
Module libgvfscommon.so from rpm gvfs-1.56.1-1.fc41.x86_64
Module libgvfsdbus.so from rpm gvfs-1.56.1-1.fc41.x86_64
Module libgstaudio-1.0.so.0 from rpm gstreamer1-plugins-base-1.24.11-1.fc41.x86_64
Module libexpat.so.1 from rpm expat-2.6.4-1.fc41.x86_64
Module libelf.so.1 from rpm elfutils-0.192-7.fc41.x86_64
Module libgstpbutils-1.0.so.0 from rpm gstreamer1-plugins-base-1.24.11-1.fc41.x86_64
Module libgsttag-1.0.so.0 from rpm gstreamer1-plugins-base-1.24.11-1.fc41.x86_64
Module libdrm.so.2 from rpm libdrm-2.4.124-1.fc41.x86_64
Module libgudev-1.0.so.0 from rpm libgudev-238-6.fc41.x86_64
Module libX11-xcb.so.1 from rpm libX11-1.8.10-2.fc41.x86_64
Module libwayland-cursor.so.0 from rpm wayland-1.23.0-2.fc41.x86_64
Module libGLX.so.0 from rpm libglvnd-1.7.0-5.fc41.x86_64
Module libEGL.so.1 from rpm libglvnd-1.7.0-5.fc41.x86_64
Module libdw.so.1 from rpm elfutils-0.192-7.fc41.x86_64
Module libunwind.so.8 from rpm libunwind-1.8.0-5.fc41.x86_64
Module liborc-0.4.so.0 from rpm orc-0.4.39-1.fc41.x86_64
Module libgstbase-1.0.so.0 from rpm gstreamer1-1.24.11-1.fc41.x86_64
Module libgstplay-1.0.so.0 from rpm gstreamer1-plugins-bad-free-1.24.11-1.fc41.x86_64
Module libgstallocators-1.0.so.0 from rpm gstreamer1-plugins-base-1.24.11-1.fc41.x86_64
Module libgstgl-1.0.so.0 from rpm gstreamer1-plugins-base-1.24.11-1.fc41.x86_64
Module libgstreamer-1.0.so.0 from rpm gstreamer1-1.24.11-1.fc41.x86_64
Module libgstvideo-1.0.so.0 from rpm gstreamer1-plugins-base-1.24.11-1.fc41.x86_64
Module libgstplayer-1.0.so.0 from rpm gstreamer1-plugins-bad-free-1.24.11-1.fc41.x86_64
Module libmedia-gstreamer.so from rpm gtk4-4.16.5-2.fc41.x86_64
Module libibus-1.0.so.5 from rpm ibus-1.5.31-1.fc41.x86_64
Module libim-ibus.so from rpm ibus-1.5.31-1.fc41.x86_64
Module libprintbackend-file.so from rpm gtk4-4.16.5-2.fc41.x86_64
Module libgmp.so.10 from rpm gmp-6.3.0-2.fc41.x86_64
Module libhogweed.so.6 from rpm nettle-3.10-3.fc41.x86_64
Module libnettle.so.8 from rpm nettle-3.10-3.fc41.x86_64
Module libtasn1.so.6 from rpm libtasn1-4.19.0-9.fc41.x86_64
Module libp11-kit.so.0 from rpm p11-kit-0.25.5-3.fc41.x86_64
Module libdbus-1.so.3 from rpm dbus-1.14.10-4.fc41.x86_64
Module libudev.so.1 from rpm systemd-256.11-1.fc41.x86_64
Module liblcms2.so.2 from rpm lcms2-2.16-4.fc41.x86_64
Module libgnutls.so.30 from rpm gnutls-3.8.8-3.fc41.x86_64
Module libavahi-client.so.3 from rpm avahi-0.8-29.fc41.x86_64
Module libavahi-common.so.3 from rpm avahi-0.8-29.fc41.x86_64
Module libcolord.so.2 from rpm colord-1.4.7-5.fc41.x86_64
Module libcups.so.2 from rpm cups-2.4.11-9.fc41.x86_64
Module libprintbackend-cups.so from rpm gtk4-4.16.5-2.fc41.x86_64
Module libsasl2.so.3 from rpm cyrus-sasl-2.1.28-27.fc41.x86_64
Module libevent-2.1.so.7 from rpm libevent-2.1.12-14.fc41.x86_64
Module libkeyutils.so.1 from rpm keyutils-1.6.3-4.fc41.x86_64
Module libkrb5support.so.0 from rpm krb5-1.21.3-3.fc41.x86_64
Module libcom_err.so.2 from rpm e2fsprogs-1.47.1-6.fc41.x86_64
Module libk5crypto.so.3 from rpm krb5-1.21.3-3.fc41.x86_64
Module libkrb5.so.3 from rpm krb5-1.21.3-3.fc41.x86_64
Module libunistring.so.5 from rpm libunistring-1.1-8.fc41.x86_64
Module libcap.so.2 from rpm libcap-2.70-4.fc41.x86_64
Module libgssapi_krb5.so.2 from rpm krb5-1.21.3-3.fc41.x86_64
Module libcrypto.so.3 from rpm openssl-3.2.2-11.fc41.x86_64
Module libssl.so.3 from rpm openssl-3.2.2-11.fc41.x86_64
Module libpsl.so.5 from rpm libpsl-0.21.5-4.fc41.x86_64
Module libssh.so.4 from rpm libssh-0.10.6-8.fc41.x86_64
Module libidn2.so.0 from rpm libidn2-2.3.7-2.fc41.x86_64
Module libnghttp2.so.14 from rpm nghttp2-1.62.1-2.fc41.x86_64
Module libsharpyuv.so.0 from rpm libwebp-1.5.0-1.fc41.x86_64
Module libbrotlicommon.so.1 from rpm brotli-1.1.0-5.fc41.x86_64
Module liblzma.so.5 from rpm xz-5.6.2-2.fc41.x86_64
Module libstemmer.so.0 from rpm snowball-2.2.0-13.fc41.x86_64
Module libsystemd.so.0 from rpm systemd-256.11-1.fc41.x86_64
Module libyaml-0.so.2 from rpm libyaml-0.2.5-15.fc41.x86_64
Module libxmlb.so.2 from rpm libxmlb-0.3.21-1.fc41.x86_64
Module libcurl.so.4 from rpm curl-8.9.1-3.fc41.x86_64
Module libXau.so.6 from rpm libXau-1.0.11-7.fc41.x86_64
Module libdatrie.so.1 from rpm libdatrie-0.2.13-10.fc41.x86_64
Module libjbig.so.2.1 from rpm jbigkit-2.1-30.fc41.x86_64
Module libLerc.so.4 from rpm liblerc-4.0.0-7.fc41.x86_64
Module libzstd.so.1 from rpm zstd-1.5.6-2.fc41.x86_64
Module libwebp.so.7 from rpm libwebp-1.5.0-1.fc41.x86_64
Module libjson-glib-1.0.so.0 from rpm json-glib-1.10.0-1.fc41.x86_64
Module libbrotlidec.so.1 from rpm brotli-1.1.0-5.fc41.x86_64
Module libbz2.so.1 from rpm bzip2-1.0.8-19.fc41.x86_64
Module libxml2.so.2 from rpm libxml2-2.12.9-1.fc41.x86_64
Module libappstream.so.5 from rpm appstream-1.0.2-4.fc41.x86_64
Module libffi.so.8 from rpm libffi-3.4.6-3.fc41.x86_64
Module libselinux.so.1 from rpm libselinux-3.7-5.fc41.x86_64
Module libpixman-1.so.0 from rpm pixman-0.44.2-1.fc41.x86_64
Module libxcb-shm.so.0 from rpm libxcb-1.17.0-3.fc41.x86_64
Module libxcb-render.so.0 from rpm libxcb-1.17.0-3.fc41.x86_64
Module libxcb.so.1 from rpm libxcb-1.17.0-3.fc41.x86_64
Module libXrender.so.1 from rpm libXrender-0.9.12-1.fc41.x86_64
Module libgraphite2.so.3 from rpm graphite2-1.3.14-16.fc41.x86_64
Module libthai.so.0 from rpm libthai-0.1.29-9.fc41.x86_64
Module libcairo-script-interpreter.so.2 from rpm cairo-1.18.2-2.fc41.x86_64
Module libXinerama.so.1 from rpm libXinerama-1.1.5-7.fc41.x86_64
Module libXrandr.so.2 from rpm libXrandr-1.5.4-4.fc41.x86_64
Module libXfixes.so.3 from rpm libXfixes-6.0.1-4.fc41.x86_64
Module libXdamage.so.1 from rpm libXdamage-1.1.6-4.fc41.x86_64
Module libXcursor.so.1 from rpm libXcursor-1.2.3-1.fc41.x86_64
Module libXext.so.6 from rpm libXext-1.3.6-2.fc41.x86_64
Module libwayland-egl.so.1 from rpm wayland-1.23.0-2.fc41.x86_64
Module libwayland-client.so.0 from rpm wayland-1.23.0-2.fc41.x86_64
Module libxkbcommon.so.0 from rpm libxkbcommon-1.7.0-4.fc41.x86_64
Module libjpeg.so.62 from rpm libjpeg-turbo-3.0.2-3.fc41.x86_64
Module libtiff.so.6 from rpm libtiff-4.6.0-6.fc41.x86_64
Module libpng16.so.16 from rpm libpng-1.6.40-4.fc41.x86_64
Module libtracker-sparql-3.0.so.0 from rpm tracker-3.7.3-3.fc41.x86_64
Module libpangoft2-1.0.so.0 from rpm pango-1.54.0-2.fc41.x86_64
Module libX11.so.6 from rpm libX11-1.8.10-2.fc41.x86_64
Module libXi.so.6 from rpm libXi-1.8.2-1.fc41.x86_64
Module libepoxy.so.0 from rpm libepoxy-1.5.10-8.fc41.x86_64
Module libgdk_pixbuf-2.0.so.0 from rpm gdk-pixbuf2-2.42.12-6.fc41.x86_64
Module libcairo-gobject.so.2 from rpm cairo-1.18.2-2.fc41.x86_64
Module libharfbuzz-subset.so.0 from rpm harfbuzz-9.0.0-3.fc41.x86_64
Module libgmodule-2.0.so.0 from rpm glib2-2.82.2-1.fc41.x86_64
Module libpcre2-8.so.0 from rpm pcre2-10.44-1.fc41.1.x86_64
Module libfribidi.so.0 from rpm fribidi-1.0.15-2.fc41.x86_64
Module libfreetype.so.6 from rpm freetype-2.13.3-1.fc41.x86_64
Module libfontconfig.so.1 from rpm fontconfig-2.15.0-8.fc41.x86_64
Module libadwaita-1.so.0 from rpm libadwaita-1.6.2-1.fc41.x86_64
Module libgobject-2.0.so.0 from rpm glib2-2.82.2-1.fc41.x86_64
Module libgio-2.0.so.0 from rpm glib2-2.82.2-1.fc41.x86_64
Module libgraphene-1.0.so.0 from rpm graphene-1.10.6-9.fc41.x86_64
Module libcairo.so.2 from rpm cairo-1.18.2-2.fc41.x86_64
Module libharfbuzz.so.0 from rpm harfbuzz-9.0.0-3.fc41.x86_64
Module libpango-1.0.so.0 from rpm pango-1.54.0-2.fc41.x86_64
Module libpangocairo-1.0.so.0 from rpm pango-1.54.0-2.fc41.x86_64
Module libgtk-4.so.1 from rpm gtk4-4.16.5-2.fc41.x86_64
Module libglib-2.0.so.0 from rpm glib2-2.82.2-1.fc41.x86_64
Stack trace of thread 2:
#0 0x000055b9a5bf2251 n/a (/app/bin/gnome-font-viewer + 0x4251)
#1 0x00007fb3ceb73ccc g_task_return_now (libgio-2.0.so.0 + 0x7cccc)
#2 0x00007fb3ceb73d05 complete_in_idle_cb (libgio-2.0.so.0 + 0x7cd05)
#3 0x00007fb3cf9e9add g_idle_dispatch (libglib-2.0.so.0 + 0x46add)
#4 0x00007fb3cf9e328c g_main_context_dispatch_unlocked.lto_priv.0 (libglib-2.0.so.0 + 0x4028c)
#5 0x00007fb3cfa437b8 g_main_context_iterate_unlocked.isra.0 (libglib-2.0.so.0 + 0xa07b8)
#6 0x00007fb3cf9e4783 g_main_context_iteration (libglib-2.0.so.0 + 0x41783)
#7 0x00007fb3ceba7dcd g_application_run (libgio-2.0.so.0 + 0xb0dcd)
#8 0x000055b9a5bf19bc n/a (/app/bin/gnome-font-viewer + 0x39bc)
#9 0x00007fb3ce56d248 fputws.cold (libc.so.6 + 0x2248)
#10 0x00007fb3ce56d30b __GI_putwc.cold (libc.so.6 + 0x230b)
#11 0x000055b9a5bf1a55 n/a (/app/bin/gnome-font-viewer + 0x3a55)
ELF object binary architecture: AMD x86-64
Do you see anything odd, maybe related to dnf?
Is there any other method of finding dnf activity? Because if dnf correctly reports the packages as removed, that means they must have been removed by dnf or another program as opposed to just being lost due to some odd file deletion or disk corruption, right?
Here are the dnf repos in case that’s of interest. It’s pretty standard stuff: