it looks like SELinux might be causing issues mounting your /home/:
Jan 28 09:13:04 localhost.localdomain audit[1]: AVC avc: denied { getattr } for pid=1 comm="systemd" path="/home" dev="dm-3" ino=820738 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:default_t:s0 tclass=lnk_file permissive=0
Jan 28 09:13:04 localhost.localdomain audit[1]: AVC avc: denied { read } for pid=1 comm="systemd" name="home" dev="dm-3" ino=820738 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:default_t:s0 tclass=lnk_file permissive=0
Jan 28 09:13:04 localhost.localdomain audit[1]: AVC avc: denied { read } for pid=1 comm="systemd" name="home" dev="dm-3" ino=820738 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:default_t:s0 tclass=lnk_file permissive=0
Jan 28 09:13:04 localhost.localdomain systemd[1]: home.mount: Failed to check directory /home: Permission denied
Jan 28 09:13:04 localhost.localdomain systemd[1]: Mounting /home...
Jan 28 09:13:04 localhost.localdomain kernel: EXT4-fs (dm-5): mounted filesystem with ordered data mode. Opts: (null)
Jan 28 09:13:04 localhost.localdomain systemd[1]: home.mount: Mount process finished, but there is no mount.
Jan 28 09:13:04 localhost.localdomain systemd[1]: home.mount: Failed with result 'protocol'.
Jan 28 09:13:04 localhost.localdomain systemd[1]: Failed to mount /home.
Jan 28 09:13:04 localhost.localdomain systemd[1]: Dependency failed for Local File Systems.
Jan 28 09:13:04 localhost.localdomain systemd[1]: Dependency failed for Mark the need to relabel after reboot.
Jan 28 09:13:04 localhost.localdomain systemd[1]: selinux-autorelabel-mark.service: Job selinux-autorelabel-mark.service/start failed with result 'dependency'.
Jan 28 09:13:04 localhost.localdomain systemd[1]: local-fs.target: Job local-fs.target/start failed with result 'dependency'.
Here are the changes from 29.20190123.0 to 29.20190124.0:
[dustymabe@media fedora-ostree-repo-mirror]$ rpm-ostree --repo=./ db diff c44dbb8bed4e1e3b6a94c51749e96f9c6d4f5841a5179ef89ebd7472263ca93f a8b5679616474f4280ec45025066d4f971d16acf6835d49e1718dd305365eb62
ostree diff commit old: c44dbb8bed4e1e3b6a94c51749e96f9c6d4f5841a5179ef89ebd7472263ca93f
ostree diff commit new: a8b5679616474f4280ec45025066d4f971d16acf6835d49e1718dd305365eb62
Upgraded:
appstream-data 29-8.fc29 -> 29-9.fc29
container-selinux 2:2.79-1.git6f01752.fc29 -> 2:2.80-1.git1b655d9.fc29
curl 7.61.1-6.fc29 -> 7.61.1-7.fc29
flatpak-builder 1.0.1-1.fc29 -> 1.0.2-1.fc29
gcr 3.28.0-2.fc29 -> 3.28.1-1.fc29
ibus-libpinyin 1.10.92-1.fc29 -> 1.11.0-1.fc29
ibus-libzhuyin 1.8.93-1.fc29 -> 1.9.0-1.fc29
ibus-typing-booster 2.4.1-1.fc29 -> 2.5.0-1.fc29
libcurl 7.61.1-6.fc29 -> 7.61.1-7.fc29
libpinyin 2.2.1-1.fc29 -> 2.2.2-1.fc29
libpinyin-data 2.2.1-1.fc29 -> 2.2.2-1.fc29
librsvg2 2.44.11-1.fc29 -> 2.44.12-1.fc29
libsolv 0.7.2-1.fc29 -> 0.7.2-2.fc29
libwebp 1.0.0-2.fc29 -> 1.0.2-1.fc29
libxcrypt 4.4.2-3.fc29 -> 4.4.2-6.fc29
libzhuyin 2.2.1-1.fc29 -> 2.2.2-1.fc29
llvm-libs 7.0.1-1.fc29 -> 7.0.1-2.fc29
osinfo-db 20181214-1.fc29 -> 20190120-1.fc29
poppler 0.67.0-6.fc29 -> 0.67.0-10.fc29
poppler-glib 0.67.0-6.fc29 -> 0.67.0-10.fc29
poppler-utils 0.67.0-6.fc29 -> 0.67.0-10.fc29
python3 3.7.2-1.fc29 -> 3.7.2-4.fc29
python3-libs 3.7.2-1.fc29 -> 3.7.2-4.fc29
rpm-ostree 2018.10-1.fc29 -> 2019.1-1.fc29
rpm-ostree-libs 2018.10-1.fc29 -> 2019.1-1.fc29
virtualbox-guest-additions 5.2.22-1.fc29 -> 5.2.24-1.fc29
Added:
jack-audio-connection-kit-1.9.12-6.fc29.x86_64
libconfig-1.7.2-2.fc29.x86_64
libffado-2.4.1-4.fc29.x86_64
libxml++-2.40.1-7.fc29.x86_64
portaudio-19-28.fc29.x86_64
python3-pyaudio-0.2.11-1.fc29.x86_64
So maybe a bug introduced in that set of updates?? For now you could try setting SELinux to permissive mode (edit kernel command line in grub to add enforcing=0) to see if that works. This is not a long term solution but would give us more information.
