For both GUI and CLI upgrades the downloads and deployment appear to proceed successfully, but after reboot the same elements show up in the GUI as available for upgrade. So, it appears to me that the upgrade has failed.
The problem may involve a failed boot loader upgrade:
sudouser@myhostname:/var/home/mainuser$ sudo systemctl status bootloader-update.service
Γ bootloader-update.service - Update bootloader on boot
Loaded: loaded (/usr/lib/systemd/system/bootloader-update.service; enabled; preset: enabled)
Drop-In: /usr/lib/systemd/system/service.d
ββ10-timeout-abort.conf, 50-keep-warm.conf
/usr/lib/systemd/system/bootloader-update.service.d
ββmigrate-static-grub-config.conf
Active: failed (Result: exit-code) since Fri 2025-06-13 07:37:04 PDT; 17min ago
Invocation: 922855c1fcac4662b6ed849074bc7dd5
Docs: https://github.com/coreos/bootupd
Process: 965 ExecStart=/usr/bin/bootupctl update (code=exited, status=1/FAILURE)
Main PID: 965 (code=exited, status=1/FAILURE)
Mem peak: 5.4M
CPU: 58ms
Jun 13 07:37:04 myhostname systemd[1]: Starting bootloader-update.service - Update bootloader on boot...
Jun 13 07:37:04 myhostname bootupctl[965]: error: Failed to find ESP device
Jun 13 07:37:04 myhostname systemd[1]: bootloader-update.service: Main process exited, code=exited, status=1/FAILURE
Jun 13 07:37:04 myhostname systemd[1]: bootloader-update.service: Failed with result 'exit-code'.
Jun 13 07:37:04 myhostname systemd[1]: Failed to start bootloader-update.service - Update bootloader on boot.
Failed to find ESP device? /boot/efi is mounted
sudouser@myhostname:/var/home/mainuser$ mount
...
composefs on / type overlay (ro,relatime,seclabel,lowerdir+=/run/ostree/.private/cfsroot-lower,datadir+=/sysroot/ostree/repo/objects,redirect_dir=on,metacopy=on)
...
/dev/sda1 on /boot/efi type hfsplus (rw,relatime,umask=22,uid=0,gid=0,nls=utf8)
...
and present:
sudouser@myhostname:/var/home/mainuser$ sudo tree /boot/
/boot/
βββ boot -> .
βββ boot.scr
βββ efi
β βββ EFI
β βββ BOOT
β β βββ BOOTX64.EFI
β β βββ fbx64.efi
β βββ fedora
β βββ BOOTX64.CSV
β βββ fonts
β βββ grub.cfg
β βββ grubx64.efi
β βββ mmx64.efi
β βββ shim.efi
β βββ shimx64.efi
β βββ shimx64-fedora.efi
βββ grub2
β βββ grub.cfg -> ../loader/grub.cfg
β βββ grubenv
βββ loader -> loader.1
βββ loader.0
β βββ entries
β βββ ostree-1.conf
β βββ ostree-2.conf
βββ loader.1
β βββ entries
β β βββ ostree-1.conf
β β βββ ostree-2.conf
β βββ grub.cfg
βββ lost+found
βββ ostree
βββ fedora-21369483479bb165e0ba16be021e8918eafb659cb98e0a067219224e34dea6c4
β βββ initramfs-6.14.2-300.fc42.x86_64.img
β βββ vmlinuz-6.14.2-300.fc42.x86_64
βββ fedora-7d6380bc41293ca3a58980acd98670b8a867639ebdc3c2e6fa2245773a2947db
β βββ initramfs-6.13.12-200.fc41.x86_64.img
β βββ vmlinuz-6.13.12-200.fc41.x86_64
βββ fedora-93883c6a8f143b19ef8177909719073ac61593c12de955791722c589cc01eb59
βββ initramfs-6.14.9-300.fc42.x86_64.img
βββ vmlinuz-6.14.9-300.fc42.x86_64
18 directories, 23 files
sudouser@myhostname:/var/home/mainuser$
Journal shows a complaint: /usr/bin/grub2-probe: error: failed to get canonical path of `composefsβ:
sudouser@myhostname:/var/home/mainuser$ journalctl -b -1
...
Jun 12 07:56:03 myhostname ostree[10114]: Copying /etc changes: 34 modified, 0 removed, 122 added
Jun 12 07:56:03 myhostname ostree[10114]: Copying /etc changes: 34 modified, 0 removed, 122 added
Jun 12 07:56:03 myhostname ostree[10114]: Refreshing SELinux policy
Jun 12 07:56:06 myhostname ostree[10114]: Refreshed SELinux policy in 2406 ms
Jun 12 07:56:06 myhostname ostree[10114]: Finalized deployment
Jun 12 07:56:07 myhostname ostree[10114]: bootfs is sufficient for calculated new size: 173.4 MB
Jun 12 07:56:08 myhostname ostree[10151]: /usr/bin/grub2-probe: error: failed to get canonical path of `composefs'.
Jun 12 07:56:08 myhostname ostree[10114]: error: Bootloader write config: grub2-mkconfig: Child process exited with code 1
Jun 12 07:56:08 myhostname systemd[1]: ostree-finalize-staged.service: Control process exited, code=exited, status=1/FAILURE
Jun 12 07:56:08 myhostname systemd[1]: ostree-finalize-staged.service: Failed with result 'exit-code'.
Jun 12 07:56:08 myhostname audit[1]: SERVICE_STOP pid=1 uid=0 auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0 msg='unit=ostree-finaliz>
Jun 12 07:56:08 myhostname kernel: audit: type=1131 audit(1749740168.869:561): pid=1 uid=0 auid=4294967295 ses=4294967295 subj=system_u:system_r:init_>
Jun 12 07:56:08 myhostname systemd[1]: Stopped ostree-finalize-staged.service - OSTree Finalize Staged Deployment.
Jun 12 07:56:08 myhostname systemd[1]: ostree-finalize-staged.service: Consumed 6.227s CPU time, 681.9M memory peak.
Jun 12 07:56:08 myhostname systemd[1]: Stopping ostree-finalize-staged-hold.service - Hold /boot Open for OSTree Finalize Staged Deployment...
Jun 12 07:56:08 myhostname systemd[1]: Stopping systemd-journal-flush.service - Flush Journal to Persistent Storage...
Jun 12 07:56:08 myhostname systemd[1]: ostree-finalize-staged-hold.service: Deactivated successfully.
Jun 12 07:56:08 myhostname systemd[1]: Stopped ostree-finalize-staged-hold.service - Hold /boot Open for OSTree Finalize Staged Deployment.
Jun 12 07:56:08 myhostname audit[1]: SERVICE_STOP pid=1 uid=0 auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0 msg='unit=ostree-finaliz>
Jun 12 07:56:08 myhostname kernel: audit: type=1131 audit(1749740168.872:562): pid=1 uid=0 auid=4294967295 ses=4294967295 subj=system_u:system_r:init_>
Jun 12 07:56:08 myhostname systemd[1]: Stopped target local-fs.target - Local File Systems.
Jun 12 07:56:08 myhostname systemd[1]: Unmounting boot-efi.mount - /boot/efi...
Jun 12 07:56:08 myhostname systemd[1]: Unmounting tmp.mount - Temporary Directory /tmp...
Jun 12 07:56:08 myhostname systemd[1]: Unmounting var-home.mount - /var/home...
lines 10952-10981/10981 (END)
but, as the mount command output above shows, composefs is mounted at /
My question is: how can I get my system to successfully upgrade?