Kinoite update to remove several packages

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1

Today’s Kinoite upgrade looks like it would remove a bunch of packages and I’m not sure why. I keep it updated and haven’t seen this happen. Any ideas on why today’s update would uninstall a bunch of stuff?

List of packages to be removed on update 
ImageMagick-1:6.9.12.50-1.fc36.x86_64
ImageMagick-libs-1:6.9.12.50-1.fc36.x86_64
PackageKit-1.2.5-1.fc36.x86_64
SDL2-2.0.22-2.fc36.x86_64
SDL2_image-2.0.5-8.fc36.x86_64
autoconf-2.71-2.fc36.noarch
avahi-compat-libdns_sd-0.8-15.fc36.x86_64
barrier-2.4.0-1.fc36.x86_64
binutils-2.37-27.fc36.x86_64
binutils-gold-2.37-27.fc36.x86_64
boost-iostreams-1.76.0-11.fc36.x86_64
bpytop-1.0.68-2.fc36.noarch
brlapi-0.8.3-6.fc36.x86_64
brltty-6.4-6.fc36.x86_64
caca-utils-0.99-0.59.beta20.fc36.x86_64
caddy-2.4.6-1.fc36.x86_64
capstone-4.0.2-9.fc36.x86_64
catimg-2.7.0-5.fc36.x86_64
clevis-18-6.fc36.x86_64
clevis-luks-18-6.fc36.x86_64
clevis-pin-tpm2-0.5.2-1.fc36.x86_64
cockpit-270-1.fc36.x86_64
cockpit-bridge-270-1.fc36.x86_64
cockpit-machines-269-1.fc36.noarch
cockpit-navigator-0.5.8-4.fc36.noarch
cockpit-networkmanager-270-1.fc36.noarch
cockpit-ostree-1:190.1-1.fc36.noarch
cockpit-packagekit-270-1.fc36.noarch
cockpit-podman-48-1.fc36.noarch
cockpit-selinux-270-1.fc36.noarch
cockpit-storaged-270-1.fc36.noarch
cockpit-system-270-1.fc36.noarch
cockpit-ws-270-1.fc36.x86_64
containerd-1.6.4-1.fc36.x86_64
cyrus-sasl-2.1.27-18.fc36.x86_64
edk2-ovmf-20220526git16779ede2d36-1.fc36.noarch
fedora-logos-httpd-36.0.0-2.fc36.noarch
freeglut-3.2.2-1.fc36.x86_64
freeipmi-1.6.8-3.fc36.x86_64
gc-8.0.6-2.fc36.x86_64
gcc-12.1.1-1.fc36.x86_64
gcc-c++-12.1.1-1.fc36.x86_64
gdk-pixbuf2-xlib-2.40.2-4.fc36.x86_64
glibc-devel-2.35-11.fc36.x86_64
glibc-headers-x86-2.35-11.fc36.noarch
glusterfs-10.2-1.fc36.x86_64
glusterfs-cli-10.2-1.fc36.x86_64
glusterfs-client-xlators-10.2-1.fc36.x86_64
glusterfs-fuse-10.2-1.fc36.x86_64
gnutls-dane-3.7.6-1.fc36.x86_64
gnutls-utils-3.7.6-1.fc36.x86_64
gperftools-libs-2.9.1-3.fc36.x86_64
gpm-libs-1.20.7-40.fc36.x86_64
graphviz-2.50.0-6.fc36.x86_64
gtk-vnc2-1.3.0-2.fc36.x86_64
gtksourceview4-4.8.3-1.fc36.x86_64
gts-0.7.6-41.20121130.fc36.x86_64
guile22-2.2.7-5.fc36.x86_64
gvnc-1.3.0-2.fc36.x86_64
hddtemp-0.3-0.50.beta15.fc36.x86_64
helm-3.5.4-2.fc35.x86_64
htop-3.2.0-1.fc36.x86_64
imlib2-1.7.4-2.fc36.x86_64
inxi-3.3.16-1.fc36.noarch
ipmitool-1.8.18-25.fc36.x86_64
iproute-tc-5.15.0-2.fc36.x86_64
ipxe-roms-qemu-20200823-8.git4bd064de.fc36.noarch
iscsi-initiator-utils-6.2.1.4-4.git2a8f9d8.fc36.x86_64
iscsi-initiator-utils-iscsiuio-6.2.1.4-4.git2a8f9d8.fc36.x86_64
isns-utils-libs-0.101-4.fc36.x86_64
jose-11-5.fc36.x86_64
julietaula-montserrat-fonts-1:7.222-2.fc36.noarch
kernel-headers-5.17.11-300.fc36.x86_64
kf5-kipi-plugins-21.12.2-1.fc36.x86_64
kf5-kipi-plugins-libs-21.12.2-1.fc36.x86_64
kf5-libkipi-21.12.2-1.fc36.x86_64
kubernetes-client-1.24.0-1.fc36.x86_64
lasi-1.1.3-8.fc36.x86_64
libXxf86dga-1.1.5-8.fc36.x86_64
libburn-1.5.4-4.fc36.x86_64
libcaca-0.99-0.59.beta20.fc36.x86_64
libcacard-3:2.8.1-2.fc36.x86_64
libdecor-0.1.0-2.fc36.x86_64
libdmx-1.1.4-12.fc36.x86_64
libfdt-1.6.1-2.fc35.x86_64
libgfapi0-10.2-1.fc36.x86_64
libgfrpc0-10.2-1.fc36.x86_64
libgfxdr0-10.2-1.fc36.x86_64
libglusterd0-10.2-1.fc36.x86_64
libglusterfs0-10.2-1.fc36.x86_64
libiscsi-1.19.0-5.fc36.x86_64
libisoburn-1.5.4-4.fc36.x86_64
libisofs-1.5.4-3.fc36.x86_64
libjose-11-5.fc36.x86_64
liblqr-1-0.4.2-19.fc36.x86_64
libluksmeta-9-13.fc36.x86_64
libnfs-4.0.0-6.fc36.x86_64
libphodav-2.5-6.fc36.x86_64
libpmem-1.11.1-4.fc36.x86_64
librados2-2:16.2.9-1.fc36.x86_64
librbd1-2:16.2.9-1.fc36.x86_64
librdmacm-39.0-1.fc36.x86_64
libretls-3.5.2-1.fc36.x86_64
libsodium-1.0.18-9.fc36.x86_64
libssh2-1.10.0-4.fc36.x86_64
libstdc++-devel-12.1.1-1.fc36.x86_64
libtpms-0.9.4-1.20220425gite4d68670e1.fc36.x86_64
libvirt-client-8.1.0-2.fc36.x86_64
libvirt-daemon-8.1.0-2.fc36.x86_64
libvirt-daemon-config-network-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-interface-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-network-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-nodedev-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-nwfilter-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-qemu-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-secret-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-core-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-disk-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-gluster-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-iscsi-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-iscsi-direct-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-logical-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-mpath-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-rbd-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-scsi-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-sheepdog-8.1.0-2.fc36.x86_64
libvirt-daemon-driver-storage-zfs-8.1.0-2.fc36.x86_64
libvirt-daemon-kvm-8.1.0-2.fc36.x86_64
libvirt-dbus-1.4.0-5.fc36.x86_64
libvirt-glib-4.0.0-4.fc36.x86_64
libvirt-libs-8.1.0-2.fc36.x86_64
libwmf-lite-0.2.12-8.fc36.x86_64
libwsman1-2.7.1-3.fc36.x86_64
libxcrypt-devel-4.4.28-1.fc36.x86_64
linux-atm-libs-2.5.1-31.fc36.x86_64
lm_sensors-3.6.0-11.fc36.x86_64
lttng-ust-2.13.1-2.fc36.x86_64
luksmeta-9-13.fc36.x86_64
lzop-1.04-8.fc36.x86_64
m4-1.4.19-3.fc36.x86_64
make-1:4.3-7.fc36.x86_64
mdevctl-1.1.0-3.fc36.x86_64
mesa-libGLU-9.0.1-6.fc36.x86_64
mkfontscale-1.2.1-4.fc36.x86_64
moby-engine-20.10.16-1.fc36.x86_64
neofetch-7.1.0-7.fc36.noarch
netcat-1.218-5.fc36.x86_64
netpbm-10.97.00-2.fc36.x86_64
numactl-libs-2.0.14-5.fc36.x86_64
numad-0.5-36.20150602git.fc36.x86_64
openssl-1:3.0.3-1.fc36.x86_64
pcre2-utf32-10.40-1.fc36.x86_64
perl-Compress-Raw-Bzip2-2.101-480.fc36.x86_64
perl-Compress-Raw-Zlib-2.101-480.fc36.x86_64
perl-Cpanel-JSON-XS-4.27-2.fc36.x86_64
perl-File-Compare-1.100.600-486.fc36.noarch
perl-File-Find-1.39-486.fc36.noarch
perl-IO-Compress-2.102-480.fc36.noarch
perl-JSON-XS-1:4.03-6.fc36.x86_64
perl-NKF-1:2.1.4-23.fc36.x86_64
perl-Types-Serialiser-1.01-5.fc36.noarch
perl-XML-Dumper-0.81-43.fc36.noarch
perl-XML-Parser-2.46-10.fc36.x86_64
perl-common-sense-3.7.5-8.fc36.x86_64
python3-argcomplete-2.0.0-2.fc36.noarch
python3-libvirt-8.0.0-2.fc36.x86_64
python3-psutil-5.8.0-13.fc36.x86_64
python3-tracer-0.7.8-2.fc36.noarch
qemu-audio-alsa-2:6.2.0-10.fc36.x86_64
qemu-audio-jack-2:6.2.0-10.fc36.x86_64
qemu-audio-oss-2:6.2.0-10.fc36.x86_64
qemu-audio-pa-2:6.2.0-10.fc36.x86_64
qemu-audio-sdl-2:6.2.0-10.fc36.x86_64
qemu-audio-spice-2:6.2.0-10.fc36.x86_64
qemu-block-curl-2:6.2.0-10.fc36.x86_64
qemu-block-dmg-2:6.2.0-10.fc36.x86_64
qemu-block-gluster-2:6.2.0-10.fc36.x86_64
qemu-block-iscsi-2:6.2.0-10.fc36.x86_64
qemu-block-nfs-2:6.2.0-10.fc36.x86_64
qemu-block-rbd-2:6.2.0-10.fc36.x86_64
qemu-block-ssh-2:6.2.0-10.fc36.x86_64
qemu-char-baum-2:6.2.0-10.fc36.x86_64
qemu-char-spice-2:6.2.0-10.fc36.x86_64
qemu-common-2:6.2.0-10.fc36.x86_64
qemu-device-display-qxl-2:6.2.0-10.fc36.x86_64
qemu-device-display-vhost-user-gpu-2:6.2.0-10.fc36.x86_64
qemu-device-display-virtio-gpu-2:6.2.0-10.fc36.x86_64
qemu-device-display-virtio-gpu-gl-2:6.2.0-10.fc36.x86_64
qemu-device-display-virtio-gpu-pci-2:6.2.0-10.fc36.x86_64
qemu-device-display-virtio-gpu-pci-gl-2:6.2.0-10.fc36.x86_64
qemu-device-display-virtio-vga-2:6.2.0-10.fc36.x86_64
qemu-device-display-virtio-vga-gl-2:6.2.0-10.fc36.x86_64
qemu-device-usb-host-2:6.2.0-10.fc36.x86_64
qemu-device-usb-redirect-2:6.2.0-10.fc36.x86_64
qemu-device-usb-smartcard-2:6.2.0-10.fc36.x86_64
qemu-img-2:6.2.0-10.fc36.x86_64
qemu-kvm-2:6.2.0-10.fc36.x86_64
qemu-kvm-core-2:6.2.0-10.fc36.x86_64
qemu-pr-helper-2:6.2.0-10.fc36.x86_64
qemu-system-x86-2:6.2.0-10.fc36.x86_64
qemu-system-x86-core-2:6.2.0-10.fc36.x86_64
qemu-ui-curses-2:6.2.0-10.fc36.x86_64
qemu-ui-egl-headless-2:6.2.0-10.fc36.x86_64
qemu-ui-gtk-2:6.2.0-10.fc36.x86_64
qemu-ui-opengl-2:6.2.0-10.fc36.x86_64
qemu-ui-sdl-2:6.2.0-10.fc36.x86_64
qemu-ui-spice-app-2:6.2.0-10.fc36.x86_64
qemu-ui-spice-core-2:6.2.0-10.fc36.x86_64
qemu-virtiofsd-2:6.2.0-10.fc36.x86_64
runc-2:1.1.1-1.fc36.x86_64
seabios-bin-1.16.0-1.fc36.noarch
seavgabios-bin-1.16.0-1.fc36.noarch
setroubleshoot-plugins-3.3.14-4.fc36.noarch
setroubleshoot-server-3.3.29-1.fc36.x86_64
sgabios-bin-1:0.20180715git-8.fc36.noarch
sheepdog-1.0.1-17.fc36.x86_64
slang-2.3.2-11.fc36.x86_64
spice-glib-0.40-1.fc36.x86_64
spice-gtk3-0.40-1.fc36.x86_64
spice-server-0.15.0-4.fc36.x86_64
sscg-3.0.2-6.fc36.x86_64
swtpm-0.7.3-1.20220427gitf2268ee.fc36.x86_64
swtpm-libs-0.7.3-1.20220427gitf2268ee.fc36.x86_64
swtpm-tools-0.7.3-1.20220427gitf2268ee.fc36.x86_64
systemd-container-250.7-1.fc36.x86_64
tpm2-tools-5.2-2.fc36.x86_64
tracer-common-0.7.8-2.fc36.noarch
trousers-0.3.15-6.fc36.x86_64
udisks2-iscsi-2.9.4-4.fc36.x86_64
udisks2-lvm2-2.9.4-4.fc36.x86_64
usbredir-0.12.0-2.fc36.x86_64
usermode-1.114-4.fc36.x86_64
vim-common-2:8.2.5052-1.fc36.x86_64
vim-enhanced-2:8.2.5052-1.fc36.x86_64
vim-filesystem-2:8.2.5052-1.fc36.noarch
virglrenderer-0.9.1-3.20210420git36391559.fc36.x86_64
virt-install-4.0.0-1.fc36.noarch
virt-manager-4.0.0-1.fc36.noarch
virt-manager-common-4.0.0-1.fc36.noarch
virt-top-1.1.1-3.fc36.x86_64
vte-profile-0.68.0-1.fc36.x86_64
vte291-0.68.0-1.fc36.x86_64
w3m-0.5.3-55.git20220429.fc36.x86_64
w3m-img-0.5.3-55.git20220429.fc36.x86_64
wmctrl-1.07-32.fc36.x86_64
xdpyinfo-1.3.2-4.fc36.x86_64
xen-libs-4.16.1-1.fc36.x86_64
xen-licenses-4.16.1-1.fc36.x86_64
xorg-x11-fonts-ISO8859-1-100dpi-7.5-33.fc36.noarch
xorriso-1.5.4-4.fc36.x86_64
xrandr-1.5.1-4.fc36.x86_64
xwininfo-1.1.5-4.fc36.x86_64
zfs-fuse-0.7.2.2-21.fc36.x86_64
2

My Kinoite system doesn’t seem to have a lot of changes today.

My changes today 
Upgraded:
  ark 21.12.2-1.fc36 -> 22.04.1-1.fc36
  ark-libs 21.12.2-1.fc36 -> 22.04.1-1.fc36
  baloo-widgets 21.12.2-1.fc36 -> 22.04.1-1.fc36
  dolphin 21.12.2.1-1.fc36 -> 22.04.1-1.fc36
  dolphin-libs 21.12.2.1-1.fc36 -> 22.04.1-1.fc36
  dolphin-plugins 21.12.2-1.fc36 -> 22.04.1-1.fc36
  gwenview 1:21.12.2-1.fc36 -> 1:22.04.1-1.fc36
  gwenview-libs 1:21.12.2-1.fc36 -> 1:22.04.1-1.fc36
  kaccounts-integration 21.12.2-2.fc36 -> 22.04.1-1.fc36
  kaccounts-providers 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kcalc 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kde-print-manager 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kde-print-manager-libs 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kdegraphics-mobipocket 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kdegraphics-thumbnailers 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kdialog 21.12.2-1.fc36 -> 22.04.1-1.fc36
  keditbookmarks 21.12.2-1.fc36 -> 22.04.1-1.fc36
  keditbookmarks-libs 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kf5-akonadi-server 21.12.2-2.fc36 -> 22.04.1-1.fc36
  kf5-akonadi-server-mysql 21.12.2-2.fc36 -> 22.04.1-1.fc36
  kf5-libkdcraw 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kf5-libkexiv2 21.12.2-1.fc36 -> 22.04.1-1.fc36
  khelpcenter 1:21.12.2-1.fc36 -> 1:22.04.1-1.fc36
  kio-extras 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kmag 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kmousetool 21.12.2-1.fc36 -> 22.04.1-1.fc36
  konsole5 21.12.2-1.fc36 -> 22.04.1-1.fc36
  konsole5-part 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kwalletmanager5 21.12.2-1.fc36 -> 22.04.1-1.fc36
  kwrite 21.12.2-1.fc36 -> 22.04.1-1.fc36
  okular 21.12.2-1.fc36 -> 22.04.1-1.fc36
  okular-libs 21.12.2-1.fc36 -> 22.04.1-1.fc36
  okular-part 21.12.2-1.fc36 -> 22.04.1-1.fc36
  spectacle 21.12.2-1.fc36 -> 22.04.1-1.fc36
Removed:
  kf5-kipi-plugins-21.12.2-1.fc36.x86_64
  kf5-kipi-plugins-libs-21.12.2-1.fc36.x86_64
  kf5-libkipi-21.12.2-1.fc36.x86_64

I’ve had similar issues in the past. In my particular instance, it seemed that my overlaid packages changed/messed up their dependencies (or something like that). For instance, if libvirt for some reason no longer has libvirt-daemon as a dependency, but you only have libvirt in your overlay, the latter will be removed.

What are your overlays? Have you tried cleaning up the metadata repository (rpm-ostree cleanup -m)?

3

Yeah, most of these are from rpm-ostree install . I have normal KDE stuff in my upgrade list. I’m not sure why this upgrade would be removing my overlay installed stuff? That’s unusual from past upgrades.

4

Here’s where I documented my similar issue:

I never found a satisfactory root cause, but I was able to “fix” it by rotating out an old pinned deployment. It must be some bug with the package cache, but I can’t figure out why/how it’s triggered.

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5

This seems to be a bug in cockpit’s ostree update page rather than in rpm-ostree itself. rpm-ostree upgrade --preview shows the packages wouldn’t actually be removed but updated, so I went ahead and risked it and rebooted and everything is still there and updated.

1 Like
6

Oh this was through Cockpit? Probably related to this issue I opened a little while ago:

1 Like