Keyboard settings are reset when the settings menu is opened

Keyboard settings, such as key remaps, are resetting when I open the settings menu.

e.g.
I have my capslock remapped to be a second escape, when I boot up, this works fine. If ever I open the keyboard settings, my setup gets set back to the default (no remapping).
On reboot, my original setup is restored again.

Other issues encountered: My shortcut menu does not show any shortcuts, however, my configured shortcuts still work.