How to consolidate repositories to be used by DNF and Software app

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Related “Common Issues” page:

RPM repository configuration is not synced between DNF and PackageKit (GUI package managers)

Problem Since Fedora 41, DNF might not see the system RPM repositories in the same state as PackageKit-based tools (e.g. GNOME Software, KDE Discover). For example one tool might see a particular repository enabled, while a second tool might see it disabled. Cause With the transition to DNF5 in Fedora 41, DNF now uses a different approach when it comes to modifying RPM repository configuration. Instead of directly modifying the .repo files (usually stored in /etc/yum.repos.d/), it creates /etc/…