Guile dev setup

I have GNU Guile 3.x in a toolbox container

I’d like to use Emacs and a couple of Emacs modules for developing some things in Guile

Do I need to install Emacs in the container together with Guile ?

I usually have a .emacs.d folder in my home folder containing the emacs init file and emacs packages

How would I deal with that ?

Yes

Toolbox is a rootles container who uses your home and config.

Manual: https://docs.fedoraproject.org/en-US/fedora-silverblue/toolbox/

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Thank you !