Oh that’s interesting. Thanks a lot. According to the logs it looks like it was erased in july (rpm.log.1). That doesn’t explain why though. But that was not caused by the F40 to F41 upgrade. The harm was already done.
$ grep gnome-boxes /var/log/dnf*
/var/log/dnf5.log.3:2024-12-17T02:49:12+0000 [615441] INFO --- DNF5 lancé avec les arguments : "dnf install gnome-boxes" ---
/var/log/dnf5.log.3:2024-12-17T02:49:26+0000 [615441] DEBUG [librepo] lr_download: Target: Packages/g/gnome-boxes-47.0-1.fc41.x86_64.rpm (-)
/var/log/dnf5.log.3:2024-12-17T02:49:26+0000 [615441] DEBUG [librepo] Selecting mirror for: Packages/g/gnome-boxes-47.0-1.fc41.x86_64.rpm
/var/log/dnf5.log.3:2024-12-17T02:49:26+0000 [615441] INFO [librepo] Downloading: http://mirror.siena.edu/fedora/linux/releases/41/Everything/x86_64/os/Packages/g/gnome-boxes-47.0-1.fc41.x86_64.rpm
/var/log/dnf5.log.3:2024-12-17T02:49:32+0000 [615441] DEBUG [librepo] Transfer finished: Packages/g/gnome-boxes-47.0-1.fc41.x86_64.rpm (Effective url: http://mirror.siena.edu/fedora/linux/releases/41/Everything/x86_64/os/Packages/g/gnome-boxes-47.0-1.fc41.x86_64.rpm)
/var/log/dnf5.log.3:2024-12-17T02:49:32+0000 [615441] INFO RPM callback open file "/var/cache/libdnf5/fedora-7efbab3c1dbcd0d4/packages/gnome-boxes-47.0-1.fc41.x86_64.rpm"
/var/log/dnf5.log.3:2024-12-17T02:49:34+0000 [615441] INFO RPM callback open file "/var/cache/libdnf5/fedora-7efbab3c1dbcd0d4/packages/gnome-boxes-47.0-1.fc41.x86_64.rpm"
/var/log/dnf5.log.3:2024-12-17T02:49:34+0000 [615441] INFO RPM callback open file "/var/cache/libdnf5/fedora-7efbab3c1dbcd0d4/packages/gnome-boxes-47.0-1.fc41.x86_64.rpm"
/var/log/dnf5.log.3:2024-12-17T02:49:36+0000 [615441] INFO RPM callback open file "/var/cache/libdnf5/fedora-7efbab3c1dbcd0d4/packages/gnome-boxes-47.0-1.fc41.x86_64.rpm"
/var/log/dnf5.log.3:2024-12-17T02:49:36+0000 [615441] INFO RPM callback install start "gnome-boxes-0:47.0-1.fc41.x86_64" total 6337668
/var/log/dnf5.log.3:2024-12-17T02:49:36+0000 [615441] INFO RPM callback install stop "gnome-boxes-0:47.0-1.fc41.x86_64" amount 6337668 total 6337668
/var/log/dnf.librepo.log.4:2024-04-24T12:35:20-0400 INFO Downloading: https://na.edge.kernel.org/fedora/development/40/Everything/x86_64/os/Packages/g/gnome-boxes-46.0-1.fc40.x86_64.rpm
/var/log/dnf.librepo.log.4:2024-05-01T09:20:05-0400 INFO Downloading: https://mirror.cpsc.ucalgary.ca/mirror/fedora/linux/updates/40/Everything/x86_64/Packages/g/gnome-boxes-46.1-1.fc40.x86_64.rpm
/var/log/dnf.rpm.log.1:2024-04-24T13:07:31-0400 SUBDEBUG Upgrade: gnome-boxes-46.0-1.fc40.x86_64
/var/log/dnf.rpm.log.1:2024-04-24T13:08:04-0400 SUBDEBUG Upgraded: gnome-boxes-45.0-1.fc39.x86_64
/var/log/dnf.rpm.log.1:2024-05-01T09:20:10-0400 SUBDEBUG Upgrade: gnome-boxes-46.1-1.fc40.x86_64
/var/log/dnf.rpm.log.1:2024-05-01T09:20:11-0400 SUBDEBUG Upgraded: gnome-boxes-46.0-1.fc40.x86_64
/var/log/dnf.rpm.log.1:2024-07-11T12:53:32-0400 SUBDEBUG Erase: gnome-boxes-46.1-1.fc40.x86_64
/var/log/dnf.rpm.log.2:2024-02-17T22:32:20-0500 SUBDEBUG Reinstall: gnome-boxes-45.0-1.fc39.x86_64
/var/log/dnf.rpm.log.2:2024-02-17T22:33:32-0500 SUBDEBUG Reinstalled: gnome-boxes-45.0-1.fc39.x86_64
$ less /var/log/dnf.rpm.log.1
2024-07-11T10:05:43-0400 INFO --- logging initialized ---
2024-07-11T12:41:43-0400 INFO --- logging initialized ---
2024-07-11T12:51:45-0400 INFO --- logging initialized ---
2024-07-11T12:53:32-0400 SUBDEBUG Erase: gnome-boxes-46.1-1.fc40.x86_64
2024-07-11T12:53:32-0400 SUBDEBUG Erase: libvirt-daemon-kvm-10.1.0-2.fc40.x86_64
2024-07-11T12:53:32-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-10.1.0-2.fc40.x86_64
2024-07-11T12:53:32-0400 SUBDEBUG Erase: libvirt-daemon-driver-qemu-10.1.0-2.fc40.x86_64
2024-07-11T12:53:32-0400 INFO Removed "/etc/systemd/system/multi-user.target.wants/virtqemud.service".
Removed "/etc/systemd/system/sockets.target.wants/virtlockd.socket".
Removed "/etc/systemd/system/sockets.target.wants/virtlogd.socket".
Removed "/etc/systemd/system/sockets.target.wants/virtqemud-admin.socket".
Removed "/etc/systemd/system/sockets.target.wants/virtqemud-ro.socket".
Removed "/etc/systemd/system/sockets.target.wants/virtqemud.socket".
Disabling 'virtqemud.service', but its triggering units are still active:
virtqemud-admin.socket, virtqemud.socket, virtqemud-ro.socket
Warning: The unit file, source configuration file or drop-ins of virtqemud.service changed on disk. Run 'systemctl daemon-reload' to reload units.
:
Warning: The unit file, source configuration file or drop-ins of virtqemud.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtqemud-ro.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtqemud-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:53:32-0400 SUBDEBUG Erase: libvirt-daemon-10.1.0-2.fc40.x86_64
2024-07-11T12:53:32-0400 INFO Warning: The unit file, source configuration file or drop-ins of libvirtd.service changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of libvirtd.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of libvirtd-ro.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of libvirtd-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of libvirtd-tls.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of libvirtd-tcp.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:53:32-0400 SUBDEBUG Erase: nbdkit-1.38.2-1.fc40.x86_64
2024-07-11T12:53:32-0400 SUBDEBUG Erase: nbdkit-basic-filters-1.38.2-1.fc40.x86_64
2024-07-11T12:53:32-0400 SUBDEBUG Erase: libvirt-gobject-5.0.0-3.fc40.x86_64
2024-07-11T12:53:32-0400 SUBDEBUG Erase: libvirt-daemon-config-network-10.1.0-2.fc40.x86_64
2024-07-11T12:53:32-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-gluster-10.1.0-2.fc40.x86_64
2024-07-11T12:53:32-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-zfs-10.1.0-2.fc40.x86_64
2024-07-11T12:53:32-0400 SUBDEBUG Erase: genisoimage-1.1.11-54.fc40.x86_64
2024-07-11T12:53:32-0400 SUBDEBUG Erase: nbdkit-selinux-1.38.2-1.fc40.noarch
2024-07-11T12:53:46-0400 SUBDEBUG Erase: qemu-kvm-2:8.2.2-1.fc40.x86_64
2024-07-11T12:53:46-0400 SUBDEBUG Erase: libvirt-daemon-driver-network-10.1.0-2.fc40.x86_64
2024-07-11T12:53:46-0400 INFO Removed "/etc/systemd/system/sockets.target.wants/virtnetworkd.socket".
Disabling 'virtnetworkd.service', but its triggering units are still active:
virtnetworkd.socket
Warning: The unit file, source configuration file or drop-ins of virtnetworkd.service changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtnetworkd.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtnetworkd-ro.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtnetworkd-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:53:46-0400 SUBDEBUG Erase: libvirt-daemon-driver-nodedev-10.1.0-2.fc40.x86_64
2024-07-11T12:53:46-0400 INFO Removed "/etc/systemd/system/sockets.target.wants/virtnodedevd.socket".
Disabling 'virtnodedevd.service', but its triggering units are still active:
virtnodedevd.socket
Warning: The unit file, source configuration file or drop-ins of virtnodedevd.service changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtnodedevd.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtnodedevd-ro.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtnodedevd-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:53:46-0400 SUBDEBUG Erase: dnsmasq-langpack-2.90-1.fc40.noarch
2024-07-11T12:53:47-0400 SUBDEBUG Erase: dnsmasq-2.90-1.fc40.x86_64
2024-07-11T12:53:47-0400 INFO Warning: The unit file, source configuration file or drop-ins of dnsmasq.service changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:53:47-0400 SUBDEBUG Erase: glusterfs-fuse-11.1-3.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: nbdkit-basic-plugins-1.38.2-1.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-plugin-lockd-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: swtpm-tools-0.9.0-1.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: swtpm-0.9.0-1.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: swtpm-libs-0.9.0-1.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: nbdkit-curl-plugin-1.38.2-1.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: nbdkit-ssh-plugin-1.38.2-1.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-disk-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-iscsi-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-iscsi-direct-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-logical-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-mpath-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-rbd-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-scsi-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-storage-core-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 INFO Removed "/etc/systemd/system/sockets.target.wants/virtstoraged.socket".
Disabling 'virtstoraged.service', but its triggering units are still active:
virtstoraged.socket
Warning: The unit file, source configuration file or drop-ins of virtstoraged.service changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtstoraged.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtstoraged-ro.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtstoraged-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-interface-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 INFO Removed "/etc/systemd/system/sockets.target.wants/virtinterfaced.socket".
Disabling 'virtinterfaced.service', but its triggering units are still active:
virtinterfaced.socket
Warning: The unit file, source configuration file or drop-ins of virtinterfaced.service changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtinterfaced.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtinterfaced-ro.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtinterfaced-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-nwfilter-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 INFO Removed "/etc/systemd/system/sockets.target.wants/virtnwfilterd.socket".
Disabling 'virtnwfilterd.service', but its triggering units are still active:
virtnwfilterd.socket
Warning: The unit file, source configuration file or drop-ins of virtnwfilterd.service changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtnwfilterd.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtnwfilterd-ro.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtnwfilterd-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:53:47-0400 SUBDEBUG Erase: libvirt-daemon-driver-secret-10.1.0-2.fc40.x86_64
2024-07-11T12:53:47-0400 INFO Removed "/etc/systemd/system/sockets.target.wants/virtsecretd.socket".
Disabling 'virtsecretd.service', but its triggering units are still active:
virtsecretd.socket
Warning: The unit file, source configuration file or drop-ins of virtsecretd.service changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtsecretd.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtsecretd-ro.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtsecretd-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:53:47-0400 SUBDEBUG Erase: swtpm-selinux-0.9.0-1.fc40.noarch
2024-07-11T12:54:46-0400 SUBDEBUG Erase: libvirt-daemon-common-10.1.0-2.fc40.x86_64
2024-07-11T12:54:46-0400 INFO Warning: The unit file, source configuration file or drop-ins of libvirt-guests.service changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:54:46-0400 SUBDEBUG Erase: iproute-tc-6.7.0-2.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: scrub-2.6.1-8.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: nbdkit-server-1.38.2-1.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: libtpms-0.9.6-6.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: libvirt-daemon-lock-10.1.0-2.fc40.x86_64
2024-07-11T12:54:46-0400 INFO Disabling 'virtlockd.service', but its triggering units are still active:
virtlockd.socket
Warning: The unit file, source configuration file or drop-ins of virtlockd.service changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtlockd.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtlockd-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:54:46-0400 SUBDEBUG Erase: glusterfs-11.1-3.fc40.x86_64
2024-07-11T12:54:46-0400 INFO attention : fichier /run/gluster/metrics: remove failed: Aucun fichier ou dossier de ce nom
2024-07-11T12:54:46-0400 SUBDEBUG Erase: mdevctl-1.3.0-5.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: libusal-1.1.11-54.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: zfs-fuse-0.7.2.2-30.fc40.x86_64
2024-07-11T12:54:46-0400 INFO Warning: The unit file, source configuration file or drop-ins of zfs-fuse.service changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:54:46-0400 INFO Removing files since we removed the last package
2024-07-11T12:54:46-0400 SUBDEBUG Erase: glusterfs-cli-11.1-3.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: libvirt-gconfig-5.0.0-3.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: zlib-ng-2.1.7-1.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: libvirt-daemon-log-10.1.0-2.fc40.x86_64
2024-07-11T12:54:46-0400 INFO Disabling 'virtlogd.service', but its triggering units are still active:
virtlogd.socket
Warning: The unit file, source configuration file or drop-ins of virtlogd.service changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtlogd.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtlogd-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:54:46-0400 SUBDEBUG Erase: libvirt-daemon-proxy-10.1.0-2.fc40.x86_64
2024-07-11T12:54:46-0400 INFO Removed "/etc/systemd/system/sockets.target.wants/virtproxyd.socket".
Disabling 'virtproxyd.service', but its triggering units are still active:
virtproxyd.socket
Warning: The unit file, source configuration file or drop-ins of virtproxyd.service changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtproxyd.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtproxyd-ro.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtproxyd-admin.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtproxyd-tls.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
Warning: The unit file, source configuration file or drop-ins of virtproxyd-tcp.socket changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:54:46-0400 SUBDEBUG Erase: libnbd-1.20.2-1.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: lzop-1.04-14.fc40.x86_64
2024-07-11T12:54:46-0400 SUBDEBUG Erase: numad-0.5-44.20150602git.fc40.x86_64
2024-07-11T12:54:46-0400 INFO Warning: The unit file, source configuration file or drop-ins of numad.service changed on disk. Run 'systemctl daemon-reload' to reload units.
2024-07-11T12:54:46-0400 SUBDEBUG Erase: systemd-container-255.8-1.fc40.x86_64
2024-07-11T14:16:43-0400 INFO --- logging initialized ---
2024-07-11T15:14:59-0400 INFO --- logging initialized ---
2024-07-11T16:03:23-0400 INFO --- logging initialized ---
2024-07-11T17:18:43-0400 INFO --- logging initialized ---